View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_103 (Length: 257)
Name: NF11788_high_103
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_103 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 1522413 - 1522183
Alignment:
| Q |
19 |
caaataaactatccacgcttattcttaagggaataaagtgtaacatcccgtataatgtttatcacactacaatattgattgtaatcgtgcctgataatgt |
118 |
Q |
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| T |
1522413 |
caaataaactatccacgcttattcttaagggaataaagtgtaacatcccgtataatgtttatcacactacaatattgattgtaatcgtgcctgataatgt |
1522314 |
T |
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| Q |
119 |
tgtttacagagaggtaaggtggtagtttctgcataagtatataagcctaaaaacacactcatctctcattcttttatcatttttctcactcaccaagctg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522313 |
tgtttacagagaggtaaggtggtagtttctgcataagtatataagcctaaaaacacactcatctctcattcttttatcatttttctcactcaccaagctg |
1522214 |
T |
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| Q |
219 |
aaataaaactccctcgtacactcttcttctc |
249 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1522213 |
aaataaaactccctcgtacactcttcttctc |
1522183 |
T |
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