View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_105 (Length: 254)
Name: NF11788_high_105
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_105 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45500666 - 45500425
Alignment:
| Q |
1 |
tgccaaagttgtctattacgatatttttggcaatgttttgcatgttctgaatctgtccaaggcgttacattatgcgatataagtaaggttgtcaaatccg |
100 |
Q |
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| T |
45500666 |
tgccaaagttgtctattacgatatttttggcaatgttttgcatgttctgaatctgtccaaggcgttacattatgcgatataagtatggttgtcaaatccg |
45500567 |
T |
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| Q |
101 |
catctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatgaatgtatttatgttttgaaaacttccggtc |
200 |
Q |
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| T |
45500566 |
catctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatgaatgtatttatgttttgaaaacttccggtc |
45500467 |
T |
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| Q |
201 |
caaagaacgcttctgcgcttattgtctatatatgactctgtg |
242 |
Q |
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| T |
45500466 |
caaagaacgcttctgcgcttattgtctatatatgactctgtg |
45500425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 27782353 - 27782479
Alignment:
| Q |
102 |
atctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatgaatgtatttatgttttgaaaacttccggtcc |
201 |
Q |
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|||||||||| ||||| ||||||||||||| |||||| ||| |||||||||||||| | ||||| ||||||||||||||| ||||||||||| ||| |
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| T |
27782353 |
atctaaataagctgggggaaattgtgaaatcaggccttattaagaatgatatcaacaagcctaattgtgaatgtatttatgtattgaaaacttctattcc |
27782452 |
T |
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| Q |
202 |
aaagaacgcttctgcgcttattgtcta |
228 |
Q |
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| T |
27782453 |
aaagaacgcttctgcgcttatagtcta |
27782479 |
T |
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