View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_high_11 (Length: 649)

Name: NF11788_high_11
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_high_11
NF11788_high_11
[»] chr3 (9 HSPs)
chr3 (388-630)||(3134341-3134582)
chr3 (9-202)||(3133763-3133956)
chr3 (39-206)||(3120932-3121099)
chr3 (204-349)||(3134205-3134349)
chr3 (61-206)||(3101558-3101703)
chr3 (532-630)||(3747505-3747603)
chr3 (67-191)||(3080078-3080202)
chr3 (82-185)||(4549233-4549336)
chr3 (67-206)||(3093939-3094078)
[»] chr8 (3 HSPs)
chr8 (67-197)||(15697868-15697998)
chr8 (123-197)||(15693511-15693585)
chr8 (67-206)||(15722895-15723034)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 388 - 630
Target Start/End: Original strand, 3134341 - 3134582
Alignment:
Q  388 aattacctatattctttcttctcgcaattttctttttgaatcttgattttgtacaaccctaattgaatccttgtagctcaagataattccaaccttaacc 487  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| |    
T  3134341 aattacctatattctttcttctcgcaattttctttttcaatcttgattttgtacaaccctaattgaatccttgcagctcaagataatta-aaccttaatc 3134439  T
Q  488 gactctattcatattgattatattgttgcaaacactattccaaaaaatggagaagagtggaaaattgaaaataatttttggcggtaaaacgatctatgat 587  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3134440 gactctattcatattgattatattgttgcaaacactataccaaaaaatggagaagagtggaaaattgaaaataatttttagcggtaaaacgatctatgat 3134539  T
Q  588 gaaagaacctctaacaacaatgttcattcaacactacaaatca 630  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3134540 gaaagaacctctaacaacaatgttcattcaacactacaaatca 3134582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 3133763 - 3133956
Alignment:
Q  9 aatgagatttctagataagaagcttcaatgtttgagagttataccgcgtagctggaaatcaaggcttgaattgggcatgtattcatagataagcagcttc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3133763 aatgagatttctagataagaagcttcaatgtttgagagttataccgcgtagctggaaatcaaggcttgaattgggcatgcattcatagataagcagcttc 3133862  T
Q  109 tcattttgctcaatgcagcaagccaacagtctcacaaggttccgatgttgcaatttggcaatcaacattacttcattcttgaattcctcaacac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3133863 tcattttgctcaatgcagcaagccaacagtctcacaaggttccgatgttgcaatttggcaatcaacattacctcattcttgaattcctcaacac 3133956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 3121099 - 3120932
Alignment:
Q  39 tttgagagttataccgcgtagctggaaatcaaggcttgaattgggcatgtattcatagataagcagcttctcattttgctcaatgcagcaagccaacagt 138  Q
    |||| |||| |||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||    
T  3121099 tttgggagtcataccgcgtagctggaaattgaggcttgaattaggcatgtactcatagataagcagcttttcattttgctcaatgcagaaagctaacagt 3121000  T
Q  139 ctcacaaggttccgatgttgcaatttggcaatcaacattacttcattcttgaattcctcaacaccttg 206  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3120999 ctcacaaggttccgatgctgcaatttggctatcaacattacttcattcttgaattcctcaacaccttg 3120932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 204 - 349
Target Start/End: Original strand, 3134205 - 3134349
Alignment:
Q  204 ttgtggtaagcaaggttgttaaaatcgggagtttgccttagagaagagcaaaatcgacaatcgttggcatattatctatttgatttgatttgaatatctt 303  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134205 ttgtggtaaggaaggttgttaaaatcgggagtttgcctcagagatgagcaaaatcgacaatcgttggcatattatctatttgatttgatttgaatatctt 3134304  T
Q  304 cagttgaaattttcatcattttcattcaacacatactaattaccta 349  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  3134305 cagttgaaattttcatcatttttattcaacacatac-aattaccta 3134349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 3101703 - 3101558
Alignment:
Q  61 tggaaatcaaggcttgaattgggcatgtattcatagataagcagcttctcattttgctcaatgcagcaagccaacagtctcacaaggttccgatgttgca 160  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||    
T  3101703 tggaaatcaaggcttgaattaggcaagtattcatagataagaagcttttcattttgctcgatgcagcaagccaatagtctgacaaggtttcgatgctgca 3101604  T
Q  161 atttggcaatcaacattacttcattcttgaattcctcaacaccttg 206  Q
    ||||||||||||| |||| |||||| || |||||||| ||||||||    
T  3101603 atttggcaatcaatattatttcattttttaattcctccacaccttg 3101558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 532 - 630
Target Start/End: Complemental strand, 3747603 - 3747505
Alignment:
Q  532 aaatggagaagagtggaaaattgaaaataatttttggcggtaaaacgatctatgatgaaagaacctctaacaacaatgttcattcaacactacaaatca 630  Q
    |||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3747603 aaatagagaagaggggaaaattgaaaatattttttggtggtaaaacgatctatgatgaaagaacctctaacaacaatgttcattcaacaatacaaatca 3747505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 3080202 - 3080078
Alignment:
Q  67 tcaaggcttgaattgggcatgtattcatagataagcagcttctcattttgctcaatgcagcaagccaacagtctcacaaggttccgatgttgcaatttgg 166  Q
    |||||||| || || |||||||||||||| | ||||| ||| ||||| |  |||||||| ||| |||| |||||||||||||| | |||||||||||| |    
T  3080202 tcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcttcaatgcaacaacccaaaagtctcacaaggtttctatgttgcaatttag 3080103  T
Q  167 caatcaacattacttcattcttgaa 191  Q
    |||| || |||||||||||||||||    
T  3080102 caataaagattacttcattcttgaa 3080078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 4549233 - 4549336
Alignment:
Q  82 ggcatgtattcatagataagcagcttctcattttgctcaatgcagcaagccaacagtctcacaaggttccgatgttgcaatttggcaatcaacattactt 181  Q
    |||||||||||||| | ||||| ||| ||||| | ||||||||| ||| |||| |||||||||||||||| |||||||||||| || || || |||||||    
T  4549233 ggcatgtattcatatagaagcaacttttcattatcctcaatgcaacaacccaatagtctcacaaggttcctatgttgcaatttagctataaagattactt 4549332  T
Q  182 catt 185  Q
    ||||    
T  4549333 catt 4549336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 3094078 - 3093939
Alignment:
Q  67 tcaaggcttgaattgggcatgtattcatagataagcagcttctcattttgctcaatgcagcaagccaacagtctcacaaggttccgatgttgcaatttgg 166  Q
    |||||||| || || |||||||||||||| | ||||| ||| ||||| | ||||||||| ||| |||| |||||||||||||| | |||||| ||||| |    
T  3094078 tcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaaaagtctcacaaggtttctatgttgtaatttag 3093979  T
Q  167 caatcaacattacttcattcttgaattcctcaacaccttg 206  Q
    | || || |||||||||||  |||| ||||| | ||||||    
T  3093978 ctataaagattacttcatttgtgaactcctccaaaccttg 3093939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 15697868 - 15697998
Alignment:
Q  67 tcaaggcttgaattgggcatgtattcatagataagcagcttctcattttgctcaatgcagcaagccaacagtctcacaaggttccgatgttgcaatttgg 166  Q
    |||||||||||||| |||||||||||||| |  || | ||| ||||||   |||||||||||| |||| |||||||| ||||| |  ||||||| ||| |    
T  15697868 tcaaggcttgaattcggcatgtattcatatactagtatcttttcatttccttcaatgcagcaacccaagagtctcacgaggtttctgtgttgcagtttag 15697967  T
Q  167 caatcaacattacttcattcttgaattcctc 197  Q
    | || || ||||||||||||||||| |||||    
T  15697968 ctatgaaaattacttcattcttgaactcctc 15697998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 15693511 - 15693585
Alignment:
Q  123 gcagcaagccaacagtctcacaaggttccgatgttgcaatttggcaatcaacattacttcattcttgaattcctc 197  Q
    |||||| || || ||||| |||||||| |||||||||||||| || || |||||||||||||||||||| |||||    
T  15693511 gcagcatgctaaaagtcttacaaggttgcgatgttgcaatttcgctataaacattacttcattcttgaactcctc 15693585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 206
Target Start/End: Original strand, 15722895 - 15723034
Alignment:
Q  67 tcaaggcttgaattgggcatgtattcatagataagcagcttctcattttgctcaatgcagcaagccaacagtctcacaaggttccgatgttgcaatttgg 166  Q
    ||||| |||||||| |||||||| ||||| |  |  | ||| |||||||  |||||||||||| | || ||  ||||||||||||  ||||||||||| |    
T  15722895 tcaagacttgaatttggcatgtactcatatactaatatcttttcattttcttcaatgcagcaacctaatagcttcacaaggttcctgtgttgcaatttag 15722994  T
Q  167 caatcaacattacttcattcttgaattcctcaacaccttg 206  Q
    | || || |||||||||||||| || ||||| | ||||||    
T  15722995 ctatgaatattacttcattcttaaactcctctaaaccttg 15723034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University