View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_high_111 (Length: 248)
Name: NF11788_high_111
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_111 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 52030682 - 52030502
Alignment:
| Q |
19 |
ttctgtaaatgaaaaatgtgtttatgtaagaaagcaacaccaccgagataattcccaacgtccacatacggaacgtccatatcggaaggttctgatcatc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
52030682 |
ttctgtaaatgaaaaatgtgtttatgtaagaaagcaacaccaccgagataattcccatcgtccacatacggaacgtccatatcgggaggttctggtcatc |
52030583 |
T |
|
| Q |
119 |
ctcgtttgacaccaccgcccgaacctcctcaataggtgaaacatcgtcctcgataacaccgtaagccatgctacgttacgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52030582 |
ctcgtttgacaccaccgcccgaacctcctcaataggtgaaacgtcgtcctcgataacaccgtaagccatgctacgttacgt |
52030502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 52030478 - 52030430
Alignment:
| Q |
188 |
gctacgttacgttattgtgcacaacaacaaaaatagtattaatggttcat |
237 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
52030478 |
gctacgttacgtgattgtgcacaacaa-aaaaatagtattaatggctcat |
52030430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University