View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_112 (Length: 248)
Name: NF11788_high_112
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_112 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 47712792 - 47713013
Alignment:
| Q |
20 |
atactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaa |
119 |
Q |
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| T |
47712792 |
atactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaa |
47712891 |
T |
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| Q |
120 |
actcaatatctttctttaaacaatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttctt |
219 |
Q |
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| T |
47712892 |
actcaatatctttctttaaacaatcagcaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttctt |
47712991 |
T |
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| Q |
220 |
agccaatacaatcttcttctct |
241 |
Q |
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| T |
47712992 |
agccaatacaatcttcttctct |
47713013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 15835226 - 15835421
Alignment:
| Q |
46 |
atcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatca |
145 |
Q |
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| T |
15835226 |
atcaaaggaagagtaaagagaggggcaccatttagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaacaatca |
15835325 |
T |
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| Q |
146 |
gaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
241 |
Q |
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| T |
15835326 |
gcaaaatgatgagagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttctct |
15835421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 19785668 - 19785473
Alignment:
| Q |
46 |
atcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatca |
145 |
Q |
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|||||| ||||||||||| ||||| |||||||| |||||||| || || || ||| | ||||| |||||||||||| || ||| ||||| ||||||||| |
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| T |
19785668 |
atcaaaggaagagtcaacagaagggcaccatttagcagcaaggctgattttattgggcaacccagatttcaaaaactgaagatccttcttcaaacaatca |
19785569 |
T |
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| Q |
146 |
gaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
241 |
Q |
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| T |
19785568 |
gcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctct |
19785473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 19795919 - 19796114
Alignment:
| Q |
46 |
atcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatca |
145 |
Q |
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|||||| ||||||||||| ||||| |||||||| ||||||||||| || || ||| |||||| ||||||||||||| | ||| ||||| ||||||||| |
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| T |
19795919 |
atcaaaggaagagtcaacagaagggcaccatttagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaacaatca |
19796018 |
T |
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| Q |
146 |
gaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
241 |
Q |
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| ||||||||||| |||||||| |||||||||||||||| || || | |||| || ||||||||||||||||| ||| ||||| |||||||| |
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| T |
19796019 |
gcgaaatgatcagagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttctct |
19796114 |
T |
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