View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_136 (Length: 207)
Name: NF11788_high_136
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_136 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 9962986 - 9963083
Alignment:
| Q |
92 |
tattttatattactcatccttataagaccaacttgttgagttgtgtcacttttttgtaaactcattttagtttttaattatattttatgtggtagata |
189 |
Q |
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| T |
9962986 |
tattttatattactcatccttgtaagaccaacttgttgagttgtatcacttttttgtcaactcattttagtttttaattctattttatgtggtagata |
9963083 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 9962534 - 9962619
Alignment:
| Q |
14 |
atgaaatagcagttcctatagaaagagctaacaacaaacttaaagttgcatcattataggaactcattccttattaggtattttata |
100 |
Q |
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| T |
9962534 |
atgaaatagcagttcccatataaagagctaacaacaaagttaaa-ttgcatcattataggaactcattccttattaggtattttata |
9962619 |
T |
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