View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_14 (Length: 628)
Name: NF11788_high_14
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 20371932 - 20371625
Alignment:
| Q |
19 |
cttcattcttgtctttccatttccttactgtttgctcacaatcgtcgttgagttcttgaatgcaagtatttcttgaaagcccatactctaactcctccac |
118 |
Q |
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| T |
20371932 |
cttcattcttgtctttccatttccttactgtttggtcacaatcgtcgttgagttcttgaatgcaagcatttcttgaaagcccatactctaactcctccac |
20371833 |
T |
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| Q |
119 |
aatttttattttgcaagttttgtcatcaaccagtaattcttccatcacattaatggactcaaaagaatttgttgtgatcaaaatacgggcaaagtgaagt |
218 |
Q |
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| T |
20371832 |
aatttttattttgcaagttttgtcatcaaccagtaattcttccatcacattaatggtctcaaaagaatttgtagtgatcaaaataggggcaaagtgagat |
20371733 |
T |
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| Q |
219 |
cgttcaatattggatctacaagaatctacctttaatagccttctatatgtcgaagaaaataaattaagaaagtgaatattccaaacatgcaacataacac |
318 |
Q |
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| T |
20371732 |
cgttcaatatttgatttacaagaatctacctttaatagccttctatatgtcgaagaaatcaaattaagaaagtgaatattccaaacatgcaacagaacac |
20371633 |
T |
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| Q |
319 |
catacagt |
326 |
Q |
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| T |
20371632 |
catacagt |
20371625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 129 - 378
Target Start/End: Complemental strand, 20364084 - 20363841
Alignment:
| Q |
129 |
ttgcaagttttgtcatcaaccagtaattcttccatcacattaatggactcaaaagaatttgttgtgatcaaaatacgggcaaagtgaagtcgttcaatat |
228 |
Q |
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| T |
20364084 |
ttgcaagtcttgtaatcaaccagtaattcatccatcacattaatgg-ctcaa--gaatttatagtgatcaaaataggggcaaagtgaaatcgttcaatat |
20363988 |
T |
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| Q |
229 |
tggatctacaagaatctacctttaatagccttctatatgtcgaagaaaataaattaagaaagtgaatattccaaacatgcaacataacaccatacagtcg |
328 |
Q |
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| T |
20363987 |
tcgatttacaagaatctacctttaatagccttctatatgtcgaagaaatcaaattaagaaagtgaatattccaaacatgcaacataata-catacagtcg |
20363889 |
T |
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| Q |
329 |
caaccaagctctcctctttcataaacattatcatccttcgatatccacac |
378 |
Q |
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| T |
20363888 |
taaccaag--ctcctctttcataaacattatcatccttcgatatccacac |
20363841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 453 - 618
Target Start/End: Complemental strand, 20371152 - 20370987
Alignment:
| Q |
453 |
aaagtgctcaacatttctccctcgttcttatttattttttctcactctttcaatgaaatttttctccctcaaccaaatgtttcctcagcccattcttttt |
552 |
Q |
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| T |
20371152 |
aaagtgctcaacatttctccctcgttcttatttttttttcctcactctttcaatgaaatttttctccctcaaccaaatgtttcctcagtccattcttttt |
20371053 |
T |
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| Q |
553 |
ctgccctaactctttacctacaccaccaaacctatcgaagcatgtcacattagtccaacccctttg |
618 |
Q |
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| T |
20371052 |
cttccctaactctttacctacaccaccaaacctattgaagcatgtcacattagtccaacccctttg |
20370987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 20371225 - 20371182
Alignment:
| Q |
392 |
agaattattcttaaccttctctagttatagccttcgtgcatgac |
435 |
Q |
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| T |
20371225 |
agaattattcttaaccttctctagttatagccttcgtgcatgac |
20371182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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