View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_16 (Length: 614)
Name: NF11788_high_16
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 10383018 - 10382423
Alignment:
| Q |
1 |
atcaagttttgtatacggatgtggacaggataatcaaggtttgtttggaaggaccgacggtataattggtctagccaacaatgaactctcgatgctttca |
100 |
Q |
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| T |
10383018 |
atcaagttttgtatacggatgtggacaggataatcaaggtttgtttggaaggaccgacggtataattggtctagccaacaatgaactctcgatgctttca |
10382919 |
T |
|
| Q |
101 |
caattgtctggaaaatatggaaacgccttttcctattgtcttcctacatcattttctacaccaaactctcccaaggaaggtttcttatccattggaacct |
200 |
Q |
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| T |
10382918 |
caattgtctggaaaatatggaaacgccttttcctattgtcttcctacatcattttctacaccaaactctcccaaggaaggtttcttatccattggaacct |
10382819 |
T |
|
| Q |
201 |
catcattgacaccgtcttcttcatacaagttcactcctttgcttaagaatccaaacaatcctagcttatattttatagatttggaatcaatcactgtggc |
300 |
Q |
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| T |
10382818 |
catcattgacaccgtcttcttcatacaagttcactcctttgcttaagaatccaaacaatcctagcttatattttatagatttggaatcaattactgtggc |
10382719 |
T |
|
| Q |
301 |
aggaagacctttaggagttgcagcatcaagttataaggttcctactatcattgattccggcacagttatcacaaggttacctacgcctgtttatacagca |
400 |
Q |
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| T |
10382718 |
aggaagacctttaggagttgcagcatcaagttataaggttcctactatcattgattccggcacagttatcacaaggttacctacgcctgtttatacaaca |
10382619 |
T |
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| Q |
401 |
ctgaaaaatgcttatgtaacgatcttgtccaagaagtatcaacaggcaccaggaatttctctattggatacctgttttaagggtagtcttgtaggaatat |
500 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10382618 |
ctgaaaaatgcttatgtgacgatcttgtccaagaagtatcaacaggcaccaggaatttctctattggatacctgttttaagggtagtcttgcaggaatat |
10382519 |
T |
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| Q |
501 |
cagaagtagcgccggacattcggataatttttaaagggggtgctgacttacaacttaagggtcacaatagccttgtagaacttgagacgggaatta |
596 |
Q |
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| T |
10382518 |
cagaagtagcgccggacattcggataatttttaaagggggtgctgacttacaacttaagggtcacaatagccttgtagaacttgagacgggaatta |
10382423 |
T |
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