View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_20 (Length: 559)
Name: NF11788_high_20
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 21 - 505
Target Start/End: Complemental strand, 39084686 - 39084202
Alignment:
| Q |
21 |
ataatacatgaaatttcataataattaatttatgcacgtgtacgcttgagatgcataaatcaatgctctaatccttaagattccgaatttactaaagtaa |
120 |
Q |
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| T |
39084686 |
ataatacatgaaatttcataataattaatttatgcacgtgtacgattgagatgcataaatcaatgctctaatccttaagattccgaatttactaaagtaa |
39084587 |
T |
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| Q |
121 |
atgaaaacaaagaacaaactgataaaaggatttcacagtttcatttgagcagcattacagaatttggtatatgcagaaaaggatctaagttacacctaag |
220 |
Q |
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| T |
39084586 |
atgaaaacaaagaacaaactgaaaaaaggatttcacagtttcatttgagcagcattacagaatttggtatatgcagaaaaggatctaagttacacctaag |
39084487 |
T |
|
| Q |
221 |
atacacacatgcaaatgcaattaaacaagaaccatactcattaacataatttctacacataataatacccaacattaatccacaatatttatttaactac |
320 |
Q |
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| T |
39084486 |
atacacacatgcaaatgcaattaaacaagaaccatactcattaacataatttctacacataataatacccaacattaatccacaatatttatttaactac |
39084387 |
T |
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| Q |
321 |
taaccaaaactaaaataactataccactaaaaactcttgaggaacaaccaatgagtatgttttttctcaatattcttctccttaatagtatccaagctag |
420 |
Q |
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| T |
39084386 |
taaccaaaactaaaataactataccactaaaaactcttgaggaacaaccaatgagtatgttttttctcaatattcttctccttaatagtatccaagctag |
39084287 |
T |
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| Q |
421 |
gcttccaccctttccctgaaatctgcctattcaaataatctggtctcccttccattatttccggcaaattctccgaaaaatcatg |
505 |
Q |
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| T |
39084286 |
gcttccaccctttccctgaaatctgcctattcaaataatctggtctcccttccattatttccggcaaattctccgaaaaatcatg |
39084202 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 44729752 - 44729815
Alignment:
| Q |
393 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
456 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| | |||||| |||||| |
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| T |
44729752 |
ttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
44729815 |
T |
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