View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_21 (Length: 555)
Name: NF11788_high_21
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 363 - 499
Target Start/End: Complemental strand, 26834914 - 26834778
Alignment:
| Q |
363 |
catccttaaccaattttatactcaacactccatcatgcattgaagccttgacatcatcaacttttgcattctcaggtaacctaaattctttcatgaacac |
462 |
Q |
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| T |
26834914 |
catccttaaccaattttatagtcaacactccatcatgcattgaagccttgacatcatcaacttttgcattctccggtaacctaaattccttcatgaacac |
26834815 |
T |
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| Q |
463 |
accattgttccttctctccttgcaatgccacttgaga |
499 |
Q |
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| T |
26834814 |
accattgttctttctctccttgcaatgccacttgaga |
26834778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 26835060 - 26834983
Alignment:
| Q |
226 |
aacacatttggatgaaaagttctaagctttgcaacaaacaaaacgtccaattcctttgtgagaaaccccttcaccatc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835060 |
aacacatttggatgaaaagttctaagctttgcaacaaacaaaacgtccaattcctttgtgagaaaccccttcaccatc |
26834983 |
T |
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