View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_high_22 (Length: 553)
Name: NF11788_high_22
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 70 - 535
Target Start/End: Original strand, 32670496 - 32670965
Alignment:
| Q |
70 |
acaaaattcaattcaattttaattcttttgtcttcagtgatactacttgaagatattagtgtaagaaataaatctaggctctaatgccacatattacaat |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32670496 |
acaaaattcaattcaattttaattcttttgtcttcagtgatactacttgaagatattagtgtaagaaataaatctaggctctaatgccacatattacaat |
32670595 |
T |
|
| Q |
170 |
atatagtctgagttcaaatttgtatatcnnnnnnngatacata----tggtgaatgttgggggaaattcatattaattacggacatgtgaannnnnnnnn |
265 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32670596 |
atatagtctgagttcaaatttgtatatcttttttttatacatacatatagtgaatgttgggggaaattcatattaattacggacatgtgaatttttttgg |
32670695 |
T |
|
| Q |
266 |
nnnnnnngatatggattcttctacatatttgaaattatgtatcattgatgcaaagcttgttatgtcaatgtcgtgaacaaagggacgaaatacacgtagt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32670696 |
cttttttgatatggattcttctacatatttgaaattatgtatcattgatgcaaagcttgttatgtcaatgtcgtgaacaaagggacgaaatacatgtagt |
32670795 |
T |
|
| Q |
366 |
tatcaagagtaaataaatattcctttaatcatttcttaatgcaactatgggagaaaatgttgtggttatatgtgagtaactatagggaggcctttattgc |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32670796 |
tatcaagagtaaataaatattcctttaatcatttcttaatgcaactatgggagaaaatgttgtggttatatgtgagtaactatagggaggcctttattgc |
32670895 |
T |
|
| Q |
466 |
atggaaagttgttagagaaccttaaatcatattcatagagaataaggaacccctttattccgctcaactt |
535 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32670896 |
atggaaagttgttagagaagcttaaatcatattcatagagaataaggaacccctttattccgctcaactt |
32670965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 32670443 - 32670473
Alignment:
| Q |
19 |
gaacttcagctgaagaaacgatcaaatactc |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32670443 |
gaacttcagctgaagaaacgatcaaatactc |
32670473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University