View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_23 (Length: 549)
Name: NF11788_high_23
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Complemental strand, 11327773 - 11327250
Alignment:
| Q |
18 |
tgttcgaggagtcaaattctgggatccttatttcttcttcatgaatcctaggcctgtttatgagattaatttccttgaccggttaccagaagagatgtct |
117 |
Q |
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| T |
11327773 |
tgttcgaggagtcaaattctgggatccttatttcttcttcatgaatcctaggcctgtttatgagattaatttccttgaccggttaccagaagagatgtct |
11327674 |
T |
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| Q |
118 |
gtcaaggctggtgggaaatcttccattgaggttgctaatcatgtgcagaaggttttgggtgatgtgcttggttttgagtgtactgggttgacaaggaaag |
217 |
Q |
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| T |
11327673 |
gtcaaggctggtgggaaatcttccattgaggttgctaatcatgtgcagaaggttttgggtgatgtgcttggttttgagtgtactgggttgacaaggaaag |
11327574 |
T |
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| Q |
218 |
ataagtatttgttgcttggaggaaatgatggggaggtggagtccatgtatggtgccaaaaagtgaaggaaaaattaccacaaatcaactccttttacaac |
317 |
Q |
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| T |
11327573 |
ataagtatttgttgcttggaggaaatgatgggaaggtggagtccatgtatggtggcaaaaagtgaaggaaaaattaccacaaatcaactccttttacaac |
11327474 |
T |
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| Q |
318 |
caaccatcactaaaaatttggtgcattaagcatatatagcttaattagtaagtctgattcaagaatattaaaccatttgaatttcagagtttgggttttg |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11327473 |
caactatcactaaaaatttggtgcattaagcatatatagcttaattagtaagtctgattcaagaatattaaaccatttgaatttcagagtttgggttttg |
11327374 |
T |
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| Q |
418 |
aagattggaatttgattactactagtacgatttttatccaaatgaattgcataattttttggaaagtaacaaatccagattctttttaagtttcttcatc |
517 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11327373 |
aagattggaatttgagtactactagtacgatttttatccaaatgaattgcataattttttggaaagtaacaaatccagattctttttaagtttcttcatc |
11327274 |
T |
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| Q |
518 |
tggcttatttttgtctatcacatt |
541 |
Q |
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| T |
11327273 |
tggcttatttttgtctatcacatt |
11327250 |
T |
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