View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_25 (Length: 541)
Name: NF11788_high_25
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Complemental strand, 3270628 - 3270183
Alignment:
| Q |
17 |
gaaagtgcaccccctaaaagaaatataaatatgcatgtttattttattttacacacgtgacaagataaactactttatttcatagtcaatatgtaaaata |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3270628 |
gaaagtgcaccccctaaaagaaatataattatgcatgtttattttattttacacacgtgacaagataaactactttatttcatagtcaatatgtaaaata |
3270529 |
T |
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| Q |
117 |
agaaatgaagctgccgacattccttaaaaagaaaaattaagcagccgacatgacatgagtgaaacaaataaacttttcattcatcaatttcaca-tatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3270528 |
agaaatgaagctgccgacattccttaaaaagaaaaattaagcagcc-----cacatgagtgaaacaaataaacttttcattcatcaatttcacattatag |
3270434 |
T |
|
| Q |
216 |
gtcacgtgtgaaatatgttacctataaacacataactcgtcagaacttattcc-tttatagaagtgttnnnnnnntccattcacattgcacatgcttaat |
314 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
3270433 |
gtcacgtgggaaatatgttacctataaacacataactcgacagaacttattccttttatagaagtgttaaaaaaatccattcacattgcacatgcttaat |
3270334 |
T |
|
| Q |
315 |
taaaaccatttaaaagaaaagttcattgacacttttgctctcaattttagcacgttcaagaaaatagtcatttctttttgaaaataaaccatttgatcac |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
3270333 |
taaaaccatttaaaagaaaagttcattgacacttttgctctcaattttagcacgttcaagaaaatagtcatttctttttgaaaataaactattggatcac |
3270234 |
T |
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| Q |
415 |
tcaagcatcacatttatggtaatcttggttttaattcaagtttgtaacctt |
465 |
Q |
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| T |
3270233 |
tcaagtatcacatttatgctaatcttggttttaattcaagtttgtaacctt |
3270183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 525
Target Start/End: Complemental strand, 3270158 - 3270124
Alignment:
| Q |
491 |
gtttgtttcaaaagtgatgatttttgccacaaaat |
525 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3270158 |
gtttgtttcaaaagtgatgatttttgccacaaaat |
3270124 |
T |
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