View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_32 (Length: 513)
Name: NF11788_high_32
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 25029802 - 25030082
Alignment:
| Q |
1 |
tatgtcccatggctgcagctacggttggatggactttgattctttaaaatttgtggcagcaaaactgacagcccctacattgttctggaaacaaacagaa |
100 |
Q |
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| T |
25029802 |
tatgtcccatggttgcagctacggttggatggactttgattctttaaaatttgtggcagcaaaactgacagcccgtacattgttctggaaacaaacagaa |
25029901 |
T |
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| Q |
101 |
aacacatatccatttaaattgcaatcagtgtcctccactttgtccagtcgatatcctgcccagcccca-ctagcgctaaccatgacttgctgccctctac |
199 |
Q |
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| T |
25029902 |
aacacatatccatttaaattgcaatcagtgtcctccactttgtccagtcgatatcctgcccagccccacctagcgctaaccatgacttgctgccctctac |
25030001 |
T |
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| Q |
200 |
actctatatcttaaaacaaatttatcatagtca------gcctcggcctcacagcatactccacaccaccgtccataaccc |
274 |
Q |
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| T |
25030002 |
attctatatcttaaaacaaatttatcatagtcagcctcggcctcggcctcacagcatactccacaccaccgtccataaccc |
25030082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 354 - 495
Target Start/End: Original strand, 25030450 - 25030591
Alignment:
| Q |
354 |
tacctgaagaataatacagaatggcttcaattcttgtatcagcacaaacaaatcaaacttgttacccaccatgtttttgagatgttggctctcctgtggt |
453 |
Q |
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|||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25030450 |
tacctgaagaataatacagaatggcttcaactcttgcataaacacaaacaaatcaaacttgttacccaccatgtttttgagatgttggctctcctgtggt |
25030549 |
T |
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| Q |
454 |
acttgcagagactccgacgatcaagttagtaaagaattcaat |
495 |
Q |
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| T |
25030550 |
acttgcagagactccgacgatcaagttagtaaagaattcaat |
25030591 |
T |
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