View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_high_33 (Length: 504)
Name: NF11788_high_33
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 158 - 486
Target Start/End: Original strand, 40844229 - 40844562
Alignment:
| Q |
158 |
tcttgaacattaagcgttagcatttactttaattaaatgctaacttaattcattctgcaataccaaaagtcaagaggaatttgtttttcctgatttaatg |
257 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40844229 |
tcttgcacattaagcgttagcatttactttagttaaatgctaacttaattcattctgcaataccaaaagtcaagaggaatttgtttttcctgatttaatg |
40844328 |
T |
|
| Q |
258 |
gagatgattgggcttatgattagtctcactctcatatgttcataattttgtcannnnnnnn-----ctattggatcctttcactttgatttgtttaaatt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40844329 |
gagatgattgggcttatgattagtctcactctcatatgttcataattttgtcatttttttttttttctattggatcctttcactttgatttgtttaaatt |
40844428 |
T |
|
| Q |
353 |
taaatatacatttcagttgaaatatatgtaaactaccttgtaggaatgatagatgcaagtgtagaatagccaatttaaaatatacagatttctttcactg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40844429 |
taaatatacatttcagttgaaatatatgtaaactaccttgtaggaatgatagatgcaagtgtagaatagccaatttaaaatatacagatttctttcactg |
40844528 |
T |
|
| Q |
453 |
tataagatatgtcgatttcttttgctgtgggtat |
486 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
40844529 |
tataagatatgtcgatttcttttactgtgggtat |
40844562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 40844170 - 40844202
Alignment:
| Q |
108 |
tttttacagaaacaagtcttgcacattattgat |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
40844170 |
tttttacagaaacaagtcttgcacattattgat |
40844202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 46501696 - 46501640
Alignment:
| Q |
177 |
gcatttactttaattaaatgctaacttaattcattctgcaataccaaaagtcaagag |
233 |
Q |
| |
|
||||||||| | ||||||||| || |||||||||||| ||||||||||||| ||||| |
|
|
| T |
46501696 |
gcatttactctgattaaatgccaatttaattcattctacaataccaaaagtgaagag |
46501640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University