View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_34 (Length: 500)
Name: NF11788_high_34
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 466
Target Start/End: Complemental strand, 38108538 - 38108086
Alignment:
| Q |
17 |
attttcagcaatgtgatgattgttgttttgatctaaggtaagatgaatcctctgttttaccataagataatttctacatttatttgaaattttcttcttc |
116 |
Q |
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| T |
38108538 |
attttcagcaatgtgatgattgttgttttgatctaaggtaagatgagtcctctgttttaccataagataatttctacatttatttgaaattttctttttc |
38108439 |
T |
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| Q |
117 |
gtatttataaagtgttgtggatcaagttttcaattgttataatatggtaggagctgctcggtattannnnnnnnnnnnnngataagctgcaattgtgtaa |
216 |
Q |
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| T |
38108438 |
gtatttataaagtgttgtggatcaagttttcaattgttatattatggtaggagctgatcggtattatttttttcttttttgataagctgcaattgtgtaa |
38108339 |
T |
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| Q |
217 |
tttcaactccttaatttaattagtttaatatcctgtgaa------------------acagctgagaagagtaatcctttctctctgttcattttgattg |
298 |
Q |
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| T |
38108338 |
tttcaactccttaatttaattagtttaatatcctgtgaaatttaaattttaggtgccacagctgagaagagtaatcctttgtctctgttcattttgattg |
38108239 |
T |
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| Q |
299 |
gattcatgaaagnnnnnnnnnnnggaaagaagttgaaatatatggagcattgagagaagaaaccataaaccaagactattcaaaattattagtataattt |
398 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38108238 |
gattcatgaaagaaaaaaaaaaaggaaagaagttgaaatatatggagcattgagagaagaaaccataaaccaagactattcaaaattat---tataatt- |
38108143 |
T |
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| Q |
399 |
ggagtttagaatggctgccagacggttgcttcgttgcgtaggtttccgtttctaatcaaacaaatgat |
466 |
Q |
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| T |
38108142 |
-----------tggctgccagacggttgcttcgttgcgtaggtttccatttctaatcaaacaaatgat |
38108086 |
T |
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