View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_36 (Length: 492)
Name: NF11788_high_36
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_36 |
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| [»] scaffold0693 (1 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Complemental strand, 3530 - 3065
Alignment:
| Q |
16 |
atatgcaccgttaggtatcaattttaatcaaaagatcattacaaatattgactttaatcctaactactttaatcaaaagatcattacaannnnnnna--t |
113 |
Q |
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| T |
3530 |
atatgcaccgttaggtatcaattttaatcaaaagatcattacaaatattgactttaatcctaactactttaatcaaaagatcattacaattttttttatt |
3431 |
T |
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| Q |
114 |
ttcaagaatatgagatacctaatttttgaaggggaaatgagataccttatattatcatgtataaccaagtttaatatatataatatgtattctcaactaa |
213 |
Q |
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| T |
3430 |
ttcaagaatatgagatactctatttttgaaggggaaat-----accttatattatcatgtataaccaagtttaatatatataatatgtattctcaactaa |
3336 |
T |
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| Q |
214 |
ataagaaaagagttaatttacctgatctagtaagaaactaatccaagccatgtgcatataataagaatcattgaagttccgtattgtagaacaagctgag |
313 |
Q |
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| T |
3335 |
ataa----agagttaatttacctgatctagtaagaaactaatccaagccatgtgcatataataagaatcattgaagttccgtattgtagaacaagctgag |
3240 |
T |
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| Q |
314 |
aaagagtgtttgcataattgaagcatgttatacccagcagctgcagatgtcacatacaacaagatcctnnnnnnncatacaaaaat-----------gat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
3239 |
aaagagtgtttgcataattgaagcatgttatacccagcagctgcagatgtcacatacaacaagatcctaaaaaaacatacaaaaattcctaattcaagat |
3140 |
T |
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| Q |
403 |
catggtatatacttcaacataaaatgtgagaacagacaaataaagaagaagaattttacttgagagcatccaagt |
477 |
Q |
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| T |
3139 |
catggtacatatttcaacataaaatgtgagaacagacaaataaagaagaagaattttacttgagagcatccaagt |
3065 |
T |
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