View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_high_39 (Length: 469)

Name: NF11788_high_39
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_high_39
NF11788_high_39
[»] chr2 (3 HSPs)
chr2 (14-454)||(35400897-35401336)
chr2 (111-234)||(38832785-38832908)
chr2 (248-306)||(38832870-38832926)
[»] scaffold0189 (2 HSPs)
scaffold0189 (140-274)||(10542-10678)
scaffold0189 (180-310)||(10636-10764)
[»] chr5 (2 HSPs)
chr5 (153-299)||(14695847-14695991)
chr5 (37-112)||(14696130-14696205)
[»] chr8 (1 HSPs)
chr8 (143-310)||(993940-994104)
[»] chr4 (5 HSPs)
chr4 (111-274)||(27758124-27758286)
chr4 (32-116)||(27758342-27758426)
chr4 (252-310)||(35434625-35434681)
chr4 (180-233)||(27758113-27758166)
chr4 (32-112)||(35434398-35434478)
[»] chr6 (1 HSPs)
chr6 (129-310)||(3048977-3049153)
[»] chr7 (3 HSPs)
chr7 (137-223)||(48473897-48473983)
chr7 (231-310)||(48473939-48474014)
chr7 (24-112)||(13073971-13074057)
[»] chr3 (1 HSPs)
chr3 (50-116)||(28984047-28984113)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Original strand, 35400897 - 35401336
Alignment:
Q  14 agatgaagaatttgggagcaagtagagttatacttgattacattcggttacttcctttttctaattttatggttcaatttatttcctttcctaaatttat 113  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35400897 agatgaagaatttgtgagca-gtagagttatacttgattacattcggttacttcctttttctaattttatggttcaatttatttcctttcctaaatttat 35400995  T
Q  114 gatgtaacaggggatcaattcaaatatgttgaataatatcaaggtttcattttcttccataatttctcatctattttctctctaggagattacactcact 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35400996 gatgtaataggggatcaattcaaatatgttgaataatatcaaggtttcactttcttccataatttctcatctattttctctctaggagattacactcact 35401095  T
Q  214 cgaagagtgccattttcttcatctcttgtctctgtaggagttgacactcactcgaagagtgtgcccttttcttcactctaagataagtagagtgtattag 313  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35401096 cgaagagtgccattttcttcatctcttgtctcagtaggagttgacactcactcgaagagtgtgcccttttcttcactctaagataagtagagtgtattag 35401195  T
Q  314 agacattgatcatttggtgttcacgatgctatactaaactccccgacaatattgatctctgtattctatcgtaattaggaagtagttctttctgatgtca 413  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  35401196 agacattgatcatttggtgttcacgatgctatactatactccccaacaatattgatctctgtattctatcgtaattaggaagtagttctttttgatgtcg 35401295  T
Q  414 tagtttgtatgcatgtattttttatcaaaaaatgttggtgg 454  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35401296 tagtttgtatgcatgtattttttatcaaaaaatgttggtgg 35401336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 38832785 - 38832908
Alignment:
Q  111 tatgatgtaacaggggatcaattcaaatatgttgaataatatcaaggtttcattttcttccataatttctcatctattttctctctaggagattacactc 210  Q
    ||||||||||||  | ||||||| ||||||||||||||| | | |||||||| |||||||   |||||||| ||   ||| ||| |||||  | ||||||    
T  38832785 tatgatgtaacattgaatcaatttaaatatgttgaataagaactaggtttcactttcttctccaatttctcttcacgtttttctataggatttgacactc 38832884  T
Q  211 actcgaagagtgccattttcttca 234  Q
    |||||||||||||  |||||||||    
T  38832885 actcgaagagtgcacttttcttca 38832908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 38832870 - 38832926
Alignment:
Q  248 taggagttgacactcactcgaagagtgtgcccttttcttcactctaagataagtagagt 306  Q
    ||||| ||||||||||||||||||  |||| |||||||||||| |||||||| ||||||    
T  38832870 taggatttgacactcactcgaaga--gtgcacttttcttcactataagataattagagt 38832926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 140 - 274
Target Start/End: Original strand, 10542 - 10678
Alignment:
Q  140 tgttgaataatatcaaggttt-cattttcttccataatttctcatctattttctctc-taggagattacactcactcgaagagtgccattttcttcatct 237  Q
    |||||||||||| |||||||| || ||||| || ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||    
T  10542 tgttgaataataacaaggttttcactttctcccctaatttctcatctattttctctcctaggagtttacacttactcgaagagtgccattttcttcatct 10641  T
Q  238 cttgtctctgtaggagttgacactcactcgaagagtg 274  Q
    ||| ||||| |||||||| ||||||||||||||||||    
T  10642 cttttctctctaggagtttacactcactcgaagagtg 10678  T

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Target: scaffold0189; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 180 - 310
Target Start/End: Original strand, 10636 - 10764
Alignment:
Q  180 tcatctattttctctctaggagattacactcactcgaagagtgccattttcttcatctcttgtctctgtaggagttgacactcactcgaagagtgtgccc 279  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  | ||||| |||||||||||||||  ||||||    
T  10636 tcatctcttttctctctaggagtttacactcactcgaagagtgccattttcttcatctcttttctctccatgagttaacactcactcgaaga--gtgccc 10733  T
Q  280 ttttcttcactctaagataagtagagtgtat 310  Q
    ||||||||||||| | |||| ||||||||||    
T  10734 ttttcttcactctgatataattagagtgtat 10764  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 14695991 - 14695847
Alignment:
Q  153 caaggtttcattttcttccataatttctcatctattttctctctaggagattacactcactcgaagagtgccattttcttcatctcttgtctctgtagga 252  Q
    |||||||||| |||||||| ||||||||||||||||| |||| |||||| |||||||||||  |||||||||||||||||||||| || ||||| |||||    
T  14695991 caaggtttcactttcttccctaatttctcatctatttcctctataggagtttacactcacttaaagagtgccattttcttcatctattttctctctagga 14695892  T
Q  253 gttgacactcactcgaagagtgtgcccttttcttcactctaagataa 299  Q
    |||  ||||||||||||||  ||||| ||||||||||||||| ||||    
T  14695891 gttagcactcactcgaaga--gtgcctttttcttcactctaaaataa 14695847  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 14696205 - 14696130
Alignment:
Q  37 agagttatacttgattacattcggttacttcctttttctaattttatggttcaatttatttcctttcctaaattta 112  Q
    ||||||| |||||||||||||  |||| |||| ||| |||||||||| |||   ||||||| ||||||||||||||    
T  14696205 agagttacacttgattacatttagttaattccctttcctaattttatagtttggtttattttctttcctaaattta 14696130  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 143 - 310
Target Start/End: Original strand, 993940 - 994104
Alignment:
Q  143 tgaataatatcaaggtttcattttcttccataatttctcatctattttctctctaggagattacactcactcgaagagtgccattttcttcatctcttgt 242  Q
    ||||||||| ||| |||||| |||||||| |||||||||||||  |||||||||||||| |||||| || ||||||||||||||||| |||||||||  |    
T  993940 tgaataataacaatgtttcactttcttccttaatttctcatctgatttctctctaggagtttacacgcattcgaagagtgccatttttttcatctctgtt 994039  T
Q  243 ctctgtaggagttgacactcactcgaagagtgtgcccttttcttcactctaagataagtagagtgtat 310  Q
    ||||  ||||||| |||||||||| |||||||   | |||||||||||||||||||| ||| ||||||    
T  994040 ctctcaaggagttaacactcactcaaagagtg---ctttttcttcactctaagataattagggtgtat 994104  T

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Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 111 - 274
Target Start/End: Complemental strand, 27758286 - 27758124
Alignment:
Q  111 tatgatgtaacaggggatcaattcaaatatgttgaataatatcaaggtttcattttcttccataatttctcatctattttctctctaggagattacactc 210  Q
    |||||||||| || | | ||||||| |||||||||||||||  ||||||||| |||||||| |||||| ||||||||||||||||||  || ||||| ||    
T  27758286 tatgatgtaatagtgaaccaattcagatatgttgaataataataaggtttcactttcttccttaatttgtcatctattttctctctaaaagtttacattc 27758187  T
Q  211 actcgaagagtgccattttcttcatctcttgtctctgtaggagttgacactcactcgaagagtg 274  Q
    ||||||| ||||  | |||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  27758186 actcgaaaagtgtta-tttcttcatctcttttctctctaggagtcgacactcactcgaagagtg 27758124  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 27758426 - 27758342
Alignment:
Q  32 caagtagagttatacttgattacattcggttacttcctttttctaattttatggttcaatttatttcctttcctaaatttatgat 116  Q
    |||||||||||  |||||||||||||  |||| ||||||||||||||||||||||| | |||||||||||| |||||||||||||    
T  27758426 caagtagagttgaacttgattacattaagttatttcctttttctaattttatggtttagtttatttccttttctaaatttatgat 27758342  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 35434625 - 35434681
Alignment:
Q  252 agttgacactcactcgaagagtgtgcccttttcttcactctaagataagtagagtgtat 310  Q
    ||||||||||| |||||||||||  ||| ||||||||||||||||||| ||||| ||||    
T  35434625 agttgacactccctcgaagagtg--cccgtttcttcactctaagataattagagagtat 35434681  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 27758166 - 27758113
Alignment:
Q  180 tcatctattttctctctaggagattacactcactcgaagagtgccattttcttc 233  Q
    |||||| |||||||||||||||   |||||||||||||||||||  ||||||||    
T  27758166 tcatctcttttctctctaggagtcgacactcactcgaagagtgctgttttcttc 27758113  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 35434398 - 35434478
Alignment:
Q  32 caagtagagttatacttgattacattcggttacttcctttttctaattttatggttcaatttatttcctttcctaaattta 112  Q
    |||||||||||  |||||||||| ||  |||| || |  |||||||||||| |||||||||||||| ||||| | ||||||    
T  35434398 caagtagagttgcacttgattacgttaagttattttccatttctaattttacggttcaatttattttctttcttgaattta 35434478  T

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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 310
Target Start/End: Complemental strand, 3049153 - 3048977
Alignment:
Q  129 caattcaaatatgttgaataatatcaaggtttcattttcttccataatttctcatctattttctctctaggagattacactcactcgaagagtgccattt 228  Q
    |||||||  |||||||||||||| || |||||   |||||||  |||||||||||||||||||||||||| |  || |||||||   ||  ||||| |||    
T  3049153 caattcagttatgttgaataataaca-ggttttggtttcttcactaatttctcatctattttctctctagaat-ttccactcacgtaaaacgtgcccttt 3049056  T
Q  229 tcttcatctcttgtctctgtaggagttgacactcactcgaagagtgtgcccttttcttcactctaagataagtagagtgtat 310  Q
     ||||||||||| | ||| ||||||||||||||||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  3049055 -cttcatctcttatttctttaggagttgacactcactcgaaga--gtgccattttcttcactctaagataattagagtgtat 3048977  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 48473897 - 48473983
Alignment:
Q  137 atatgttgaataatatcaaggtttcattttcttccataatttctcatctattttctctctaggagattacactcactcgaagagtgc 223  Q
    ||||||| ||||||| ||||| |||| ||||||||  ||||| |||||| |||||||||||||||   |||||||||||||||||||    
T  48473897 atatgttaaataataacaagggttcactttcttccccaatttttcatctcttttctctctaggagtcgacactcactcgaagagtgc 48473983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 48473939 - 48474014
Alignment:
Q  231 ttcatctcttgtctctgtaggagttgacactcactcgaagagtgtgcccttttcttcactctaagataagtagagtgtat 310  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||    |||||||||||||| |||||| ||||||||||    
T  48473939 ttcatctcttttctctctaggagtcgacactcactcgaagagtg----cttttcttcactcttagataattagagtgtat 48474014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 13074057 - 13073971
Alignment:
Q  24 tttgggagcaagtagagttatacttgattacattcggttacttcctttttctaattttatggttcaatttatttcctttcctaaattta 112  Q
    |||| |||||||||||||   ||||||||||| ||||||   ||||||| ||||||||||||||   ||||||||||||||||||||||    
T  13074057 tttgtgagcaagtagagtgc-acttgattacaatcggttttctcctttt-ctaattttatggttatgtttatttcctttcctaaattta 13073971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 28984113 - 28984047
Alignment:
Q  50 attacattcggttacttcctttttctaattttatggttcaatttatttcctttcctaaatttatgat 116  Q
    ||||||||| |||| |||| ||| ||||||||| |||||| |||||||||||||||| |||||||||    
T  28984113 attacattccgttatttccctttactaattttacggttcagtttatttcctttcctagatttatgat 28984047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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