View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_44 (Length: 444)
Name: NF11788_high_44
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 53984670 - 53984254
Alignment:
| Q |
18 |
ggagcttgcagggattggacgcaaacaatttgttccatagtattgaaaaatacatacatctacttgaagctaaagtcacaatcttaaggtgcttgtccaa |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984670 |
ggagcttgcagggattggacacaaacaatttgttccatagtattgaaaaatacatacatctacttgaagctaaagtcacaatcttaaggtgcttgtccaa |
53984571 |
T |
|
| Q |
118 |
cttgtatggggtatagtaggatttaattattggcactagactaaaaaggggtcgaatgaatcttaaaagtaatttctctaaccaccaaaaaataatccat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53984570 |
cttgtatggggtatagtaggatttaattattggcactagactaaaaaggggtcgaatgaatcttaaaagtaatttctctaagcaccaaaaaataatccat |
53984471 |
T |
|
| Q |
218 |
gttttatatttaggctagagaaagaaatcgacccacaaaaggggtgaacttgcagggtttctttccttccgggtgtggagggaataatattatgtttgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984470 |
gttttatatttaggctagagaaagaaatcgacccacaaaaggggtgaacttgcagggtttctttccttccgggtgtggagggaataatattatgtttgta |
53984371 |
T |
|
| Q |
318 |
a-nnnnnnnnnnnnnnnnnnncaacatgcatgatttttactcacgtctcctattattctcatcatatatcttacttaatttcctccctttttggtttctt |
416 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984370 |
atttttttttttttactttttcaacatgcatgatttttactcacgtctcctattattctcatcatatatcttacttaatttcctccctttttggtttctt |
53984271 |
T |
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| Q |
417 |
tttagccattcatctca |
433 |
Q |
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||||||||||| ||||| |
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| T |
53984270 |
tttagccattcttctca |
53984254 |
T |
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