View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_45 (Length: 442)
Name: NF11788_high_45
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 7298204 - 7298618
Alignment:
| Q |
18 |
gtaaccgtctttcagtttgtagttgaggactttggcttgacagagtatatttcataatgattatttggtctgagaccaggatcggcatttggtactgggc |
117 |
Q |
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| T |
7298204 |
gtaaccgtctttcagtttgtagttgaggactttggcttgacagagtatatttcataatgattatttggtctgagaccaggatcggcatttggtactgggc |
7298303 |
T |
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| Q |
118 |
cattgtgatcctaagatgatctttaagaaaagtaaaacaagaaagaagacaagttggtttgtttttatgtcaaaggctaccttaattattgtaaacagtt |
217 |
Q |
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| T |
7298304 |
cattgtgatcctaagatgatctttaagaaaagtaaaacaagaaagaagacaagttggtttgtttttatgtcaaaggctaccttaattattgtaaacagtt |
7298403 |
T |
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| Q |
218 |
ttaggaatttgagtcattgtatcatatgtcttgatgttgttcatgtatatgcaggggaaatttcacctatcttgccgaggagctgtcgttacgttccaac |
317 |
Q |
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| T |
7298404 |
ttaggaatttgagtcattgtatcatatgtcttgatgttgttcatgtatatgcaggggaaatttcacctatcttgccgaggagctgtcgttacgttccaac |
7298503 |
T |
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| Q |
318 |
ttgcagtgagtattccatggaggcatataagagatatggttttttgaagggtacgactttgactgtgtggcgtctatgtcgttgcaaccctcttggtaat |
417 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7298504 |
ttgcagtgagtattccatggaggcgtataagagatatggtttcttgaagggtacgactttgactgtgtggcgtctatgtcgttgcaaccctcttggtaat |
7298603 |
T |
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| Q |
418 |
tcaccagtacctttg |
432 |
Q |
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| T |
7298604 |
tcaccagtacctttg |
7298618 |
T |
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