View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_58 (Length: 386)
Name: NF11788_high_58
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 168 - 367
Target Start/End: Original strand, 6131647 - 6131846
Alignment:
| Q |
168 |
atttacgtgatcaaaattttaataaattttagagattattttaaaatttcgttaatcacatggagcaaatttgtgatttactacaaagggtaattctcaa |
267 |
Q |
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| T |
6131647 |
atttacgtgatcaaaattttaataaattttagagattattttaaaatttcgttaatcacatggagcaaatttgtgatttactacaaagggtaattctcaa |
6131746 |
T |
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| Q |
268 |
caagagctaacgagtaatgtttaactttttattgcagttgggattatattcaaattggtgacaaaatagtgaaagacatggatcgtatggaagcttttcg |
367 |
Q |
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| T |
6131747 |
caagagctaacgagtaatgtttaactttttattgcagttgggattatattcaaattggtgacaaaatagtgaaagacatggatcgtatggaagcttttcg |
6131846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 6131562 - 6131651
Alignment:
| Q |
51 |
cctatttaagcaaagtccgactcgatctggcctactctcaccccaaatttctaccaactaagttacgcttagaagctcaaaactcattta |
140 |
Q |
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| T |
6131562 |
cctatttaagcaaagtccgactcgatctgggctactctcacccctaatttctaccaactaagttacgcttagaagctcaaaactcattta |
6131651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 6137575 - 6137647
Alignment:
| Q |
293 |
tttttattgcagttgggattatattcaaattggtgacaaaatagtgaaagacatggatcgtatggaagctttt |
365 |
Q |
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| T |
6137575 |
tttttattgcagatgggattatattcaaataggtaacaaaatagtgaaagacatggatcgtatggaagctttt |
6137647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 13284910 - 13284838
Alignment:
| Q |
293 |
tttttattgcagttgggattatattcaaattggtgacaaaatagtgaaagacatggatcgtatggaagctttt |
365 |
Q |
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| T |
13284910 |
tttttattgcagatgggattatattcaaataggtaacaaaatagtgaaagagatggaccatatggaagctttt |
13284838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 364
Target Start/End: Original strand, 6162761 - 6162792
Alignment:
| Q |
333 |
atagtgaaagacatggatcgtatggaagcttt |
364 |
Q |
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| T |
6162761 |
atagtgaaagacatggatcgtatggaagcttt |
6162792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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