View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_high_66 (Length: 361)
Name: NF11788_high_66
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_66 |
 | |
|
| [»] scaffold0482 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 33184577 - 33184905
Alignment:
| Q |
20 |
gtacctacattaaacaatgtagccagataaacatcaactcataaataccagaaatgcaactatatactacatactatatgctataactaatatgaatgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33184577 |
gtacctacattaaacaatgtagccagataaacatcaactcataaatacaagaaatgcaactatatactacatactatatgctataactaatatgaatgat |
33184676 |
T |
|
| Q |
120 |
ttttatcaccttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaagaaatttggaaccaccttcaatgccattaagac |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33184677 |
ttttatcaccttgctctaagattggtgcaaattctgtcccatagatccatgatttctctcccactaagaaatttggaaccaccttcaatgccattaagac |
33184776 |
T |
|
| Q |
220 |
ataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatgccatccatcatc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33184777 |
ataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatgccacccatcatc |
33184876 |
T |
|
| Q |
320 |
cattgggattataaaatggtaccttctct |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33184877 |
cattgggattataaaatggtaccttctct |
33184905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 348
Target Start/End: Original strand, 971 - 1099
Alignment:
| Q |
210 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
971 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat |
1055 |
T |
|
| Q |
308 |
---ccatccatcatccattgggattataaaatggtaccttctct |
348 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1056 |
tgcccacccatcatccattgggattataaaatggtaccttctct |
1099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 918 - 979
Alignment:
| Q |
127 |
accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga |
188 |
Q |
| |
|
||||||||| ||||||| ||| |||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
918 |
accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga |
979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 348
Target Start/End: Complemental strand, 7774295 - 7774167
Alignment:
| Q |
210 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7774295 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat |
7774211 |
T |
|
| Q |
308 |
---ccatccatcatccattgggattataaaatggtaccttctct |
348 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7774210 |
tgcccacccatcatccattgggattataaaatggtaccttctct |
7774167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 348
Target Start/End: Complemental strand, 7790942 - 7790814
Alignment:
| Q |
210 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7790942 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat |
7790858 |
T |
|
| Q |
308 |
---ccatccatcatccattgggattataaaatggtaccttctct |
348 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7790857 |
tgcccacccatcatccattgggattataaaatggtaccttctct |
7790814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 348
Target Start/End: Complemental strand, 7811527 - 7811399
Alignment:
| Q |
210 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7811527 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat |
7811443 |
T |
|
| Q |
308 |
---ccatccatcatccattgggattataaaatggtaccttctct |
348 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7811442 |
tgcccacccatcatccattgggattataaaatggtaccttctct |
7811399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 7811580 - 7811519
Alignment:
| Q |
127 |
accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga |
188 |
Q |
| |
|
||||||||||||||||| ||| |||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
7811580 |
accttgctctaagattggtgctaatttggttccatagatccatgattcctctcccattaaga |
7811519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 7774348 - 7774287
Alignment:
| Q |
127 |
accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga |
188 |
Q |
| |
|
||||||||| ||||||| ||| |||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
7774348 |
accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga |
7774287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 7790995 - 7790934
Alignment:
| Q |
127 |
accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga |
188 |
Q |
| |
|
||||||||| ||||||| ||| |||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
7790995 |
accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga |
7790934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 41147886 - 41147842
Alignment:
| Q |
201 |
ccttcaatgccattaagacataccaaatggccataaccattgcaa |
245 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
41147886 |
ccttcaatgtcattaagacatatcaaatgaccataaccattgcaa |
41147842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University