View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_high_7 (Length: 762)

Name: NF11788_high_7
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_high_7
NF11788_high_7
[»] chr6 (3 HSPs)
chr6 (89-744)||(19751982-19752637)
chr6 (1-89)||(13425678-13425766)
chr6 (56-89)||(22274411-22274444)
[»] chr7 (5 HSPs)
chr7 (1-89)||(36167733-36167821)
chr7 (1-90)||(19886571-19886660)
chr7 (1-89)||(12859247-12859335)
chr7 (1-91)||(32775169-32775259)
chr7 (16-74)||(5465745-5465803)
[»] chr5 (5 HSPs)
chr5 (1-89)||(7992410-7992498)
chr5 (1-92)||(32325813-32325904)
chr5 (1-89)||(12904982-12905070)
chr5 (38-91)||(34641930-34641983)
chr5 (55-91)||(28827501-28827537)
[»] chr2 (7 HSPs)
chr2 (1-87)||(44673172-44673258)
chr2 (1-89)||(25438287-25438375)
chr2 (16-85)||(37154903-37154972)
chr2 (38-89)||(21006375-21006426)
chr2 (38-91)||(6536543-6536596)
chr2 (38-89)||(24132211-24132262)
chr2 (55-91)||(39574646-39574682)
[»] chr8 (8 HSPs)
chr8 (4-88)||(34784524-34784608)
chr8 (4-92)||(20900771-20900859)
chr8 (1-87)||(1548139-1548225)
chr8 (1-85)||(3117707-3117791)
chr8 (1-89)||(23033396-23033484)
chr8 (4-89)||(3277518-3277603)
chr8 (14-77)||(29168561-29168624)
chr8 (55-91)||(15657345-15657381)
[»] chr3 (5 HSPs)
chr3 (4-89)||(53208690-53208775)
chr3 (1-85)||(32130160-32130244)
chr3 (1-91)||(7322853-7322943)
chr3 (17-89)||(9454604-9454676)
chr3 (55-91)||(1915482-1915518)
[»] chr4 (10 HSPs)
chr4 (1-87)||(2588493-2588579)
chr4 (1-87)||(5650761-5650847)
chr4 (1-90)||(16497912-16498001)
chr4 (605-745)||(16444203-16444343)
chr4 (637-745)||(16514319-16514427)
chr4 (14-90)||(52249500-52249576)
chr4 (38-89)||(13310357-13310408)
chr4 (38-90)||(28075448-28075500)
chr4 (38-91)||(11156547-11156600)
chr4 (258-311)||(16443945-16443998)
[»] chr1 (2 HSPs)
chr1 (38-92)||(23963006-23963060)
chr1 (55-89)||(50443101-50443135)
[»] scaffold0003 (1 HSPs)
scaffold0003 (56-91)||(247194-247229)


Alignment Details
Target: chr6 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 89 - 744
Target Start/End: Original strand, 19751982 - 19752637
Alignment:
Q  89 ggtgagtggaatgcatgtgtcgtgatacattattgtgttccttcctcataataaacagcattttgcaaaaattaattactaattacttactaattgcatc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19751982 ggtgagtggaatgcatgtgtcgtgatacattattgtgttccttcctcataataaacagcattttgcaaaaattaattactaattacatactaattgcatc 19752081  T
Q  189 tctagcaggtagcactcaacagtatgataaaaaatcgagcagatacaataactctacctagggaagttgttctttgcatttaatgatagatggttgatat 288  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19752082 tctagcaggtagcactcaacagtatgataaaaaatcgagtagatacaataactctacctagggaagttgttctttgcatttaatgatagatggttgatat 19752181  T
Q  289 tatggtcaccccagccacaacaataccaagaattgcaaacagtctcatcgcagggatagctggtttgggaggtggaattgtacggagctcctgaagctcc 388  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19752182 tatggtcaccccagccacaacaatacaaagaattgcaaagagtctcatcgcagggatagctggtttgggaggtggaattgtacagagctcctgaagctcc 19752281  T
Q  389 tggatctgataataataaggaaaattggtttcagtaaatttttcaatgaccagtaaaagaatagcaataccattttgaaaaagaagagacaaaaatactt 488  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19752282 tggatctgataatagtaaggaaaattggtttcagtaaatttttcaatgaccagtaaaagaataacaataccattttgaaaaagaagagacaaaaatactt 19752381  T
Q  489 atcagcagnnnnnnncattcacaagtaaagtaggagtagctgagtaattcttcatgtgctaaatacttttgaagtgcaaaaacggtacattctaacattt 588  Q
    ||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19752382 atcagcagtttttttcattcacgagtaaagtaggagtagctgagtaattcttcatgtgctaaatacttttgaagtgcaaaaatggtacattctaacattt 19752481  T
Q  589 attatgatattaaataacataaataacagaattttcaccaacctcgataggttgcttccaattcttctttattccttctagatgcccctctccaacaaca 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19752482 attatgatattaaataacataaataacagaattttcaccaacctcgataggttgcttccaattcttctttattccttctagatgcccctctccaacaaca 19752581  T
Q  689 gcgacaactgttctgctcttccttgccactgttaataatgtgtgggacatgtacct 744  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19752582 gcgacaactgttctgctcttccttgccactgttaataatgtgtgggacatgtacct 19752637  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13425678 - 13425766
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  13425678 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacataagatcgtgcgatcctacgtgctgcgactcgttcctgactaccttg 13425766  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 22274444 - 22274411
Alignment:
Q  56 tcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||||||||||||| ||||||||    
T  22274444 tcctacgtgctgggactcgttcctgtctaccttg 22274411  T

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Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36167733 - 36167821
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36167733 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 36167821  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 19886660 - 19886571
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttgg 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  19886660 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgtgctgggactcgttcctgactaccttgg 19886571  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12859247 - 12859335
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12859247 ttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 12859335  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 32775259 - 32775169
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttggt 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  32775259 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaaggtcgtgtgatcctacatgctgggactcgttcctgactaccttggt 32775169  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 5465745 - 5465803
Alignment:
Q  16 gaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcg 74  Q
    ||||||||||||||| | |||||||||||| ||||||  ||||||||  ||||||||||    
T  5465745 gaagcacggtcgaggggatgtggcacgtaaaatcgtgtgatcctacgacctgggactcg 5465803  T

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Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 7992410 - 7992498
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7992410 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 7992498  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32325813 - 32325904
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttggtg 92  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32325813 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtacgatcgtgcgatcctacgtgctgggactcgttcctgactaccttggtg 32325904  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12904982 - 12905070
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  12904982 ttcgtaagtaggatcgaagcatggtcgatgtgttgtggcacgtaagatcgtgcgatcctacgtgctggaactcgttcctgactaccttg 12905070  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 34641930 - 34641983
Alignment:
Q  38 gcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttggt 91  Q
    |||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||    
T  34641930 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttggt 34641983  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 28827537 - 28827501
Alignment:
Q  55 atcctacgtgctgggactcgttcctgactaccttggt 91  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28827537 atcctacgtgctgggactcgttcctgtctaccttggt 28827501  T

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Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 44673258 - 44673172
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactacct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44673258 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 44673172  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 25438375 - 25438287
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  25438375 ttcgtaagtaggatcaaagcacggtcgaggtgctgtggcacgtaagatcatgcgatcctacgtgctgggactcgttcctgactaccttg 25438287  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 37154903 - 37154972
Alignment:
Q  16 gaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactac 85  Q
    |||||||||||||| ||  ||||||||||||||||||| |||||||| || ||||||||||| |||||||    
T  37154903 gaagcacggtcgagatgtcgtggcacgtaagatcgtgcgatcctacgagccgggactcgttcttgactac 37154972  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 21006375 - 21006426
Alignment:
Q  38 gcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    |||||||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  21006375 gcacgtaagatcgtgcgatcctacgtgctgggactcgatcctggctaccttg 21006426  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 6536596 - 6536543
Alignment:
Q  38 gcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttggt 91  Q
    |||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||    
T  6536596 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttggt 6536543  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 24132262 - 24132211
Alignment:
Q  38 gcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    |||||||||||||||| |||||||||||||||| ||| ||||| ||||||||    
T  24132262 gcacgtaagatcgtgcgatcctacgtgctgggattcgatcctggctaccttg 24132211  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 39574646 - 39574682
Alignment:
Q  55 atcctacgtgctgggactcgttcctgactaccttggt 91  Q
    |||||||||||||||||||||||||| ||||||||||    
T  39574646 atcctacgtgctgggactcgttcctgtctaccttggt 39574682  T

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Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 34784524 - 34784608
Alignment:
Q  4 gtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactacctt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34784524 gtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacctt 34784608  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 20900859 - 20900771
Alignment:
Q  4 gtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttggtg 92  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  20900859 gtaagtaggatcgaagcacagtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggacttgttcctgactaccttggtg 20900771  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1548225 - 1548139
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactacct 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  1548225 ttcgtaagtaggatcgaagcacgttcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggactcgttcctgactacct 1548139  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3117791 - 3117707
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactac 85  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  3117791 ttcgtaagtaggatcgaagcacggtcgaggtactgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 3117707  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 23033484 - 23033396
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||    
T  23033484 ttcgtaagtaggatcgaagcacggtcgaggtgttgtggcacgtaagatcatgcgatcctacatgctgggactcgttcctgagtaccttg 23033396  T

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Target: chr8; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 3277603 - 3277518
Alignment:
Q  4 gtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  3277603 gtaagtaggattgaagcacggtcgaggtgttgtggcacgtaagatcgtgcgatcctacatgctgggattcgttcctgactaccttg 3277518  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 29168561 - 29168624
Alignment:
Q  14 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttc 77  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  29168561 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgagctgggagtcgttc 29168624  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 15657381 - 15657345
Alignment:
Q  55 atcctacgtgctgggactcgttcctgactaccttggt 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  15657381 atcctacgtgctgggactcgttcctgactaccttggt 15657345  T

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Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 53208690 - 53208775
Alignment:
Q  4 gtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53208690 gtaagtaggatcgaaacacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 53208775  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 32130244 - 32130160
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactac 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  32130244 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgcgactcgttcctgactac 32130160  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7322943 - 7322853
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttggt 91  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  7322943 ttcgtaagtagaactgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctggctaccttggt 7322853  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 9454676 - 9454604
Alignment:
Q  17 aagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |||||||||||    
T  9454676 aagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggaatcgttcttgactaccttg 9454604  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 1915518 - 1915482
Alignment:
Q  55 atcctacgtgctgggactcgttcctgactaccttggt 91  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1915518 atcctacgtgctgggactcgttcctgtctaccttggt 1915482  T

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Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2588493 - 2588579
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactacct 87  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2588493 ttcgtaagtaggaccgaagtacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 2588579  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5650761 - 5650847
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactacct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||    
T  5650761 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtgagattgtgcgatcctacgtgcttggactcgttcctgactacct 5650847  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 16497912 - 16498001
Alignment:
Q  1 ttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttgg 90  Q
    ||||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||    
T  16497912 ttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacatacgatcgtgcgatcctacgtgctgggactcgttcttgactaccttgg 16498001  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 605 - 745
Target Start/End: Original strand, 16444203 - 16444343
Alignment:
Q  605 acataaataacagaattttcaccaacctcgataggttgcttccaattcttctttattccttctagatgcccctctccaacaacagcgacaactgttctgc 704  Q
    |||||||||| ||||| ||||||||| | || ||||||||||||||| ||||| |||||||||||||||     ||| |||||||| |||||||||||||    
T  16444203 acataaataatagaatgttcaccaacattgacaggttgcttccaattgttcttcattccttctagatgcattcttccgacaacagcaacaactgttctgc 16444302  T
Q  705 tcttccttgccactgttaataatgtgtgggacatgtacctg 745  Q
    |||  |||||| || |||||||||||| |||||||||||||    
T  16444303 tctcacttgccccttttaataatgtgtaggacatgtacctg 16444343  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 637 - 745
Target Start/End: Complemental strand, 16514427 - 16514319
Alignment:
Q  637 aggttgcttccaattcttctttattccttctagatgcccctctccaacaacagcgacaactgttctgctcttccttgccactgttaataatgtgtgggac 736  Q
    |||||||||||||||||| || ||||||| ||||||||||| |||||||||||| ||||||| ||||||||  ||||||||| ||||||| |||  ||||    
T  16514427 aggttgcttccaattctttttcattccttgtagatgcccctttccaacaacagccacaactgatctgctctcacttgccacttttaataacgtggaggac 16514328  T
Q  737 atgtacctg 745  Q
    |||||||||    
T  16514327 atgtacctg 16514319  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 52249500 - 52249576
Alignment:
Q  14 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttgg 90  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  52249500 tcgaagcacggtagaggtgctgtggcacgtaagatcgtgcgatcctacgtactgggactcattcctgactaccttgg 52249576  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 13310357 - 13310408
Alignment:
Q  38 gcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttg 89  Q
    ||||||||||||||||||||||||  ||||||||||| ||||| ||||||||    
T  13310357 gcacgtaagatcgtgcaatcctacaagctgggactcgatcctggctaccttg 13310408  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 28075500 - 28075448
Alignment:
Q  38 gcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttgg 90  Q
    |||||||||||||||| |||||||  ||||||||||| ||||| |||||||||    
T  28075500 gcacgtaagatcgtgcgatcctacaagctgggactcgatcctggctaccttgg 28075448  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 11156600 - 11156547
Alignment:
Q  38 gcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttggt 91  Q
    |||| ||||||| ||| |||||||||||||| ||||| ||||| ||||||||||    
T  11156600 gcacataagatcatgcgatcctacgtgctggaactcgatcctggctaccttggt 11156547  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 16443945 - 16443998
Alignment:
Q  258 ttctttgcatttaatgatagatggttgatattatggtcaccccagccacaacaa 311  Q
    |||||||||||||| || ||| | |||||||||||| |||||||||||| ||||    
T  16443945 ttctttgcatttaaagacagaagcttgatattatggccaccccagccacgacaa 16443998  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 23963006 - 23963060
Alignment:
Q  38 gcacgtaagatcgtgcaatcctacgtgctgggactcgttcctgactaccttggtg 92  Q
    |||||||||||| ||| ||||||||||||||||| || ||||| |||||||||||    
T  23963006 gcacgtaagatcatgcgatcctacgtgctgggacccgatcctggctaccttggtg 23963060  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 50443135 - 50443101
Alignment:
Q  55 atcctacgtgctgggactcgttcctgactaccttg 89  Q
    |||||||||||||||||||||||||| ||||||||    
T  50443135 atcctacgtgctgggactcgttcctgtctaccttg 50443101  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 247194 - 247229
Alignment:
Q  56 tcctacgtgctgggactcgttcctgactaccttggt 91  Q
    ||||||||||||||||| ||||||||||||||||||    
T  247194 tcctacgtgctgggactggttcctgactaccttggt 247229  T

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