View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_79 (Length: 332)
Name: NF11788_high_79
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 1420689 - 1420956
Alignment:
| Q |
1 |
tattgtaaatatcaaaataaaaaagtatatgagatttaatctttgaataacgaaataaattgcgattatttctgaagttacatgaggaaattgaagaatg |
100 |
Q |
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| T |
1420689 |
tattgtaaatatcaaaataaaaaagtatatgagatttaatctttgaataacgaaataaattgcgattatttctgaagttacatgaggaaattgaagaatg |
1420788 |
T |
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| Q |
101 |
gagatgaaaaattggatcttgatgtcttttcacaccttatactagttca-----nnnnnnnnngtgatgtttaaggtgtcaaagttcaagtagagaatga |
195 |
Q |
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| T |
1420789 |
gagatgaaaaattggatcttgatgtcttttcacaccttatactacttcattttttatttttttgtgatgtttaaggtgtcaaagttcaagtagagaatga |
1420888 |
T |
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| Q |
196 |
acttgaaaaatgtaccttgttgtagaggctgaacgattcatctcatagtttattatataaaaggaacttga |
266 |
Q |
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| T |
1420889 |
acttgaaaaatgtaccttgttgtagaggctgaacgatttatctcatagt---ttatataaaaggaacttga |
1420956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 1422860 - 1422927
Alignment:
| Q |
262 |
cttgatttttcaacagcatcatagatctattcatacataaaatataaaaactgcattccctataattg |
329 |
Q |
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| T |
1422860 |
cttgattattcaaaagcatcatagatctattgatacataaaatataaaaactgcattccctataattg |
1422927 |
T |
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