View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_high_8 (Length: 732)

Name: NF11788_high_8
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_high_8
NF11788_high_8
[»] chr7 (16 HSPs)
chr7 (18-645)||(43706251-43706885)
chr7 (436-558)||(29723297-29723414)
chr7 (686-719)||(43706169-43706202)
chr7 (428-468)||(29891071-29891111)
chr7 (435-470)||(6387935-6387970)
chr7 (435-470)||(12252068-12252103)
chr7 (436-470)||(17904163-17904197)
chr7 (436-470)||(26770179-26770213)
chr7 (436-470)||(29427407-29427441)
chr7 (436-470)||(37179574-37179608)
chr7 (436-470)||(43701551-43701585)
chr7 (436-470)||(46467578-46467612)
chr7 (436-469)||(4405353-4405386)
chr7 (436-469)||(17904407-17904440)
chr7 (436-469)||(29890826-29890859)
chr7 (436-469)||(37179331-37179364)
[»] chr8 (12 HSPs)
chr8 (436-547)||(27027582-27027688)
chr8 (433-469)||(25106455-25106491)
chr8 (434-470)||(28378945-28378981)
chr8 (436-470)||(2509039-2509073)
chr8 (436-470)||(9739985-9740019)
chr8 (436-470)||(27024433-27024467)
chr8 (435-469)||(28379191-28379225)
chr8 (436-470)||(33837972-33838006)
chr8 (435-469)||(45334275-45334309)
chr8 (436-470)||(45334519-45334553)
chr8 (436-469)||(33837729-33837762)
chr8 (436-469)||(38495472-38495505)
[»] chr5 (10 HSPs)
chr5 (436-547)||(42793489-42793595)
chr5 (436-555)||(41610373-41610487)
chr5 (433-470)||(29874951-29874988)
chr5 (435-470)||(12399189-12399224)
chr5 (435-470)||(23090297-23090332)
chr5 (435-470)||(34208537-34208572)
chr5 (436-470)||(3077597-3077631)
chr5 (436-469)||(12398946-12398979)
chr5 (436-469)||(29875198-29875231)
chr5 (436-469)||(42757805-42757838)
[»] chr2 (8 HSPs)
chr2 (436-547)||(10112339-10112445)
chr2 (436-558)||(36963550-36963667)
chr2 (427-470)||(10118695-10118738)
chr2 (436-470)||(35793149-35793183)
chr2 (433-469)||(15233999-15234035)
chr2 (433-468)||(44104543-44104578)
chr2 (436-470)||(31296083-31296117)
chr2 (436-469)||(43040849-43040882)
[»] chr4 (5 HSPs)
chr4 (436-546)||(19257032-19257137)
chr4 (430-470)||(19256180-19256220)
chr4 (436-470)||(36016279-36016313)
chr4 (436-470)||(45590742-45590776)
chr4 (436-469)||(45590986-45591019)
[»] chr3 (21 HSPs)
chr3 (487-572)||(49319599-49319684)
chr3 (432-470)||(32677720-32677758)
chr3 (432-470)||(41349614-41349652)
chr3 (434-469)||(18997211-18997246)
chr3 (434-469)||(18999750-18999785)
chr3 (433-468)||(46878980-46879015)
chr3 (436-470)||(1352239-1352273)
chr3 (436-470)||(18996967-18997001)
chr3 (436-470)||(18999506-18999540)
chr3 (436-470)||(29371781-29371815)
chr3 (436-470)||(39528749-39528783)
chr3 (436-469)||(1351996-1352029)
chr3 (436-469)||(29014690-29014723)
chr3 (436-469)||(29371538-29371571)
chr3 (436-469)||(32677477-32677510)
chr3 (436-469)||(36737834-36737867)
chr3 (436-469)||(38855561-38855594)
chr3 (436-469)||(39518651-39518684)
chr3 (436-469)||(39528993-39529026)
chr3 (433-470)||(39807222-39807259)
chr3 (436-469)||(41349371-41349404)
[»] chr1 (13 HSPs)
chr1 (436-545)||(33023357-33023461)
chr1 (434-470)||(18126849-18126885)
chr1 (429-469)||(47669363-47669403)
chr1 (438-469)||(3384597-3384628)
chr1 (436-470)||(1236273-1236307)
chr1 (436-470)||(3384836-3384870)
chr1 (436-470)||(4055484-4055518)
chr1 (436-470)||(4817269-4817303)
chr1 (436-470)||(9831503-9831537)
chr1 (436-470)||(33020206-33020240)
chr1 (436-470)||(47669119-47669153)
chr1 (436-469)||(10737701-10737734)
chr1 (436-469)||(46220503-46220536)
[»] chr6 (7 HSPs)
chr6 (436-470)||(27312359-27312393)
chr6 (436-470)||(29302514-29302548)
chr6 (436-470)||(32274434-32274468)
chr6 (436-469)||(2543325-2543358)
chr6 (436-469)||(8504733-8504766)
chr6 (436-469)||(27312114-27312147)
chr6 (436-469)||(32274678-32274711)


Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Complemental strand, 43706885 - 43706251
Alignment:
Q  18 caaacaaagtaatggaccattgcatctcatatctacattattccaaaaatagaccatcaattgtctctctcaatcaattaccaaacggtgaatgcgcact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43706885 caaacaaagtaatggaccattgcatctcatatctacattattccaaaaatagacaatcaattgtctctctcaatcaattaccaaacggtgaatgcgcact 43706786  T
Q  118 gaaagcatagcagttattgtcaaatattctttttgataatatctacaatattctgctgtgacttgtttttctaaaagaaatctgcttcgagcaatattag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43706785 gaaagcatagcagttattgtcaaatattctttttgataatatctacaatattctgctgtgacttgtttttctaaaagaaatctgcttcgagcaatattag 43706686  T
Q  218 atataaaaggtaattaaggacaattcattttcacgcggaatgtttctgataacgtactctctcatccaactattttgacgtggaaa-tttttaaatattt 316  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||    
T  43706685 atataaaaggtaattaaggacaaatcattttcacgcggaatgtttctgataacgtac--tctcatccaactattttgacgcggaaattttttaaatattt 43706588  T
Q  317 aataggatttaatgaccaatatttcaaatttgaaatat--------nnnnnnnnctgatttaaaaggtaattaagggcaactcgtgctataaatacaaaa 408  Q
    ||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||    
T  43706587 aataggatttaatgaccaatatttcaaatttgaaatataaaaaaaaaaaaaaaactgatttaaaaggtaattaagggcaactcgtgctataaatacaaaa 43706488  T
Q  409 accaataatataaaga-tttttaattattactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaatt 507  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||| ||||  | || |   |||||||||| || |||||||||||||||||||||||    
T  43706487 accaataatgtaaagattttttaattattactccctccattcttttt-ttttttttttatgttttagatgattgcacaaatattaaggaatcattaaatt 43706389  T
Q  508 ataagaataattatatgatttatactaaaatacccttactcactccttgatggtaagttttaaatgagtacatctttgctccatttagcaatggtccatt 607  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  43706388 ataagaataattatatggtttatactaaaatacccttacttactctttgatggtgagttttaaatgagtacatctttgctccatttaacaatggtccatt 43706289  T
Q  608 tagtccggttaagattatggatgcaagacatgtgacac 645  Q
    || |||| ||||||||||||||||||||||| ||||||    
T  43706288 taatccgtttaagattatggatgcaagacatttgacac 43706251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 436 - 558
Target Start/End: Complemental strand, 29723414 - 29723297
Alignment:
Q  436 tactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaattataagaataattatatgatttatactaa 535  Q
    |||||||||||||| ||||||||||||||||||| |     |||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  29723414 tactccctccattccttttcttttgatgttttaggt-----gattgcacaaatattaaggaatcattaaattataagaataattgtatggtttatactaa 29723320  T
Q  536 aatacccttactcactccttgat 558  Q
    |||||||||||| ||||||||||    
T  29723319 aatacccttacttactccttgat 29723297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 719
Target Start/End: Complemental strand, 43706202 - 43706169
Alignment:
Q  686 attgttgcattgtattcactctccctcttcatct 719  Q
    ||||||||||||||||||||||||||||||||||    
T  43706202 attgttgcattgtattcactctccctcttcatct 43706169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 29891111 - 29891071
Alignment:
Q  428 ttaattattactccctccattctttttcttttgatgtttta 468  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  29891111 ttaattactactccctccattccttttcttttgatgtttta 29891071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 470
Target Start/End: Complemental strand, 6387970 - 6387935
Alignment:
Q  435 ttactccctccattctttttcttttgatgttttaga 470  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6387970 ttactccctccattccttttcttttgatgttttaga 6387935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 470
Target Start/End: Original strand, 12252068 - 12252103
Alignment:
Q  435 ttactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| |||||||||||||||||||||    
T  12252068 ttactccctccattttttttcttttgatgttttaga 12252103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 17904163 - 17904197
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttaga 17904197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 26770179 - 26770213
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttaga 26770213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 29427441 - 29427407
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  29427441 tactccctccattccttttcttttgatgttttaga 29427407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 37179608 - 37179574
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  37179608 tactccctccattccttttcttttgatgttttaga 37179574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 43701551 - 43701585
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  43701551 tactccctccattccttttcttttgatgttttaga 43701585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 46467612 - 46467578
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttaga 46467578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 4405386 - 4405353
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  4405386 tactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 29890826 - 29890859
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  29890826 tactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 436 - 547
Target Start/End: Complemental strand, 27027688 - 27027582
Alignment:
Q  436 tactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaattataagaataattatatgatttatactaa 535  Q
    |||||||||||||| ||||||||||||||||||| |     |||| || |||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  27027688 tactccctccattccttttcttttgatgttttaggt-----gattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaa 27027594  T
Q  536 aatacccttact 547  Q
    ||||||||||||    
T  27027593 aatacccttact 27027582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 25106491 - 25106455
Alignment:
Q  433 tattactccctccattctttttcttttgatgttttag 469  Q
    ||||||||||||||||| |||||||||||||||||||    
T  25106491 tattactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 470
Target Start/End: Original strand, 28378945 - 28378981
Alignment:
Q  434 attactccctccattctttttcttttgatgttttaga 470  Q
    ||||||||||||||| |||||||||||||||||||||    
T  28378945 attactccctccattatttttcttttgatgttttaga 28378981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 2509073 - 2509039
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgttttaga 2509039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 9739985 - 9740019
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  9739985 tactccctccattccttttcttttgatgttttaga 9740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 27024433 - 27024467
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  27024433 tactccctccattccttttcttttgatgttttaga 27024467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 28379225 - 28379191
Alignment:
Q  435 ttactccctccattctttttcttttgatgttttag 469  Q
    ||||||||||||||| |||||||||||||||||||    
T  28379225 ttactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 33838006 - 33837972
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  33838006 tactccctccattccttttcttttgatgttttaga 33837972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 45334275 - 45334309
Alignment:
Q  435 ttactccctccattctttttcttttgatgttttag 469  Q
    ||||||||||||||| |||||||||||||||||||    
T  45334275 ttactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 45334553 - 45334519
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttaga 45334519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 38495472 - 38495505
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  38495472 tactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 436 - 547
Target Start/End: Complemental strand, 42793595 - 42793489
Alignment:
Q  436 tactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaattataagaataattatatgatttatactaa 535  Q
    |||||||||||||| ||||||||||||||||||| |     |||| || |||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  42793595 tactccctccattccttttcttttgatgttttaggt-----gattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaa 42793501  T
Q  536 aatacccttact 547  Q
    ||||||||||||    
T  42793500 aatacccttact 42793489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 436 - 555
Target Start/End: Original strand, 41610373 - 41610487
Alignment:
Q  436 tactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaattataagaataattatatgatttatactaa 535  Q
    |||||||||||||| ||||||||||||||||||    || |||||  | ||||||||| |||||||||||||||| |||||||| |||| ||||||||||    
T  41610373 tactccctccattccttttcttttgatgtttta----ag-tgattggacaaatattaaagaatcattaaattatatgaataattgtatggtttatactaa 41610467  T
Q  536 aatacccttactcactcctt 555  Q
    |||||||||||| |||||||    
T  41610468 aatacccttacttactcctt 41610487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 433 - 470
Target Start/End: Original strand, 29874951 - 29874988
Alignment:
Q  433 tattactccctccattctttttcttttgatgttttaga 470  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29874951 tattactccctccattctttttcttttgatgttttaga 29874988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 470
Target Start/End: Complemental strand, 12399224 - 12399189
Alignment:
Q  435 ttactccctccattctttttcttttgatgttttaga 470  Q
    ||||||||||||||| ||||||||||||||||||||    
T  12399224 ttactccctccattccttttcttttgatgttttaga 12399189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 470
Target Start/End: Original strand, 23090297 - 23090332
Alignment:
Q  435 ttactccctccattctttttcttttgatgttttaga 470  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23090297 ttactccctccattccttttcttttgatgttttaga 23090332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 470
Target Start/End: Original strand, 34208537 - 34208572
Alignment:
Q  435 ttactccctccattctttttcttttgatgttttaga 470  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34208537 ttactccctccattccttttcttttgatgttttaga 34208572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 3077597 - 3077631
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  3077597 tactccctccattcattttcttttgatgttttaga 3077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 12398946 - 12398979
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 29875231 - 29875198
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  29875231 tactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 436 - 547
Target Start/End: Original strand, 10112339 - 10112445
Alignment:
Q  436 tactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaattataagaataattatatgatttatactaa 535  Q
    |||||||||||||| ||||||||||||||||||| |     |||| || |||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  10112339 tactccctccattccttttcttttgatgttttaggt-----gattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaa 10112433  T
Q  536 aatacccttact 547  Q
    ||||||||||||    
T  10112434 aatacccttact 10112445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 558
Target Start/End: Complemental strand, 36963667 - 36963550
Alignment:
Q  436 tactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaattataagaataattatatgatttatactaa 535  Q
    ||||| ||| |||| ||||||||||||||||||| |     |||| || |||||||||| ||| |||||||||||  ||||||| |||| ||||||||||    
T  36963667 tactctctctattccttttcttttgatgttttaggt-----gattgcacaaatattaagaaattattaaattatagaaataattgtatggtttatactaa 36963573  T
Q  536 aatacccttactcactccttgat 558  Q
    ||||| |||||| ||||||||||    
T  36963572 aatactcttacttactccttgat 36963550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 427 - 470
Target Start/End: Complemental strand, 10118738 - 10118695
Alignment:
Q  427 tttaattattactccctccattctttttcttttgatgttttaga 470  Q
    ||||||||||||||||||||||| |||||||||||| |||||||    
T  10118738 tttaattattactccctccattccttttcttttgatattttaga 10118695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 35793183 - 35793149
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||||||||||||||||||||||||    
T  35793183 tactccctccattctttttcttttgatgttttaga 35793149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 15234035 - 15233999
Alignment:
Q  433 tattactccctccattctttttcttttgatgttttag 469  Q
    ||||||||||||||||| |||||||||||||||||||    
T  15234035 tattactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 468
Target Start/End: Original strand, 44104543 - 44104578
Alignment:
Q  433 tattactccctccattctttttcttttgatgtttta 468  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44104543 tattactccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 31296083 - 31296117
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||| ||||||||||||||||||||||||||||    
T  31296083 tactccttccattctttttcttttgatgttttaga 31296117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 436 - 546
Target Start/End: Complemental strand, 19257137 - 19257032
Alignment:
Q  436 tactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaattataagaataattatatgatttatactaa 535  Q
    |||||||||||||| |||||||||||||||||||||     |||| || |||||||||||||| ||||||||||| |||||||| |||| ||||||||||    
T  19257137 tactccctccattccttttcttttgatgttttagat-----gattgcacaaatattaaggaattattaaattataggaataattgtatggtttatactaa 19257043  T
Q  536 aatacccttac 546  Q
    |||||||||||    
T  19257042 aatacccttac 19257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 19256180 - 19256220
Alignment:
Q  430 aattattactccctccattctttttcttttgatgttttaga 470  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  19256180 aattaatactccctccattccttttcttttgatgttttaga 19256220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 36016279 - 36016313
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  36016279 tactccctccattccttttcttttgatgttttaga 36016313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 45590742 - 45590776
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  45590742 tactccctccattcattttcttttgatgttttaga 45590776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 45591019 - 45590986
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttag 45590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 487 - 572
Target Start/End: Complemental strand, 49319684 - 49319599
Alignment:
Q  487 atattaaggaatcattaaattataagaataattatatgatttatactaaaatacccttactcactccttgatggtaagttttaaat 572  Q
    ||||||||||||||||||||||||  ||||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  49319684 atattaaggaatcattaaattatagaaataattgtatggtttatactaaaatacccttacttactccttgatggtgagttttaaat 49319599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 32677758 - 32677720
Alignment:
Q  432 ttattactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  32677758 ttattactccctccattccttttcttttgatgttttaga 32677720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 41349652 - 41349614
Alignment:
Q  432 ttattactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  41349652 ttattactccctccattccttttcttttgatgttttaga 41349614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 469
Target Start/End: Complemental strand, 18997246 - 18997211
Alignment:
Q  434 attactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||||| |||||||||||||||||||    
T  18997246 attactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 469
Target Start/End: Complemental strand, 18999785 - 18999750
Alignment:
Q  434 attactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||||| |||||||||||||||||||    
T  18999785 attactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 468
Target Start/End: Complemental strand, 46879015 - 46878980
Alignment:
Q  433 tattactccctccattctttttcttttgatgtttta 468  Q
    ||||||||||||||||| ||||||||||||||||||    
T  46879015 tattactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 1352273 - 1352239
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  1352273 tactccctccattccttttcttttgatgttttaga 1352239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 18996967 - 18997001
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttaga 18997001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 18999506 - 18999540
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttaga 18999540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 29371815 - 29371781
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  29371815 tactccctccattccttttcttttgatgttttaga 29371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 39528749 - 39528783
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  39528749 tactccctccattccttttcttttgatgttttaga 39528783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 29014690 - 29014723
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  29014690 tactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 29371538 - 29371571
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttag 29371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 32677477 - 32677510
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttag 32677510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 36737834 - 36737867
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  36737834 tactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 38855594 - 38855561
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  38855594 tactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 39518684 - 39518651
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  39518684 tactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 39807259 - 39807222
Alignment:
Q  433 tattactccctccattctttttcttttgatgttttaga 470  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  39807259 tattacttcctccattccttttcttttgatgttttaga 39807222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 41349371 - 41349404
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  41349371 tactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 436 - 545
Target Start/End: Complemental strand, 33023461 - 33023357
Alignment:
Q  436 tactccctccattctttttcttttgatgttttagattagatgatttcagaaatattaaggaatcattaaattataagaataattatatgatttatactaa 535  Q
    |||||||||||||| ||||||||||| ||||||| |     |||| || |||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  33023461 tactccctccattccttttcttttgacgttttaggt-----gattgcataaatattaaggaatcattaaattataggaataattgtatggtttatactaa 33023367  T
Q  536 aataccctta 545  Q
    ||||||||||    
T  33023366 aataccctta 33023357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 470
Target Start/End: Original strand, 18126849 - 18126885
Alignment:
Q  434 attactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||||| ||||||||||||||||||||    
T  18126849 attactccctccattccttttcttttgatgttttaga 18126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 469
Target Start/End: Complemental strand, 47669403 - 47669363
Alignment:
Q  429 taattattactccctccattctttttcttttgatgttttag 469  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  47669403 taattactactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 469
Target Start/End: Original strand, 3384597 - 3384628
Alignment:
Q  438 ctccctccattctttttcttttgatgttttag 469  Q
    ||||||||||||||||||||||||||||||||    
T  3384597 ctccctccattctttttcttttgatgttttag 3384628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 1236307 - 1236273
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttaga 1236273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 3384870 - 3384836
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||| ||||||||||||||||||||||||||    
T  3384870 tactcccttcattctttttcttttgatgttttaga 3384836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 4055484 - 4055518
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  4055484 tactccctccattccttttcttttgatgttttaga 4055518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 4817269 - 4817303
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  4817269 tactccctccattccttttcttttgatgttttaga 4817303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 9831503 - 9831537
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgttttaga 9831537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 33020206 - 33020240
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttaga 33020240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 47669119 - 47669153
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  47669119 tactccctccattccttttcttttgatgttttaga 47669153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 10737701 - 10737734
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  10737701 tactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 46220536 - 46220503
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  46220536 tactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 27312393 - 27312359
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  27312393 tactccctccattccttttcttttgatgttttaga 27312359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 29302548 - 29302514
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttaga 29302514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 32274434 - 32274468
Alignment:
Q  436 tactccctccattctttttcttttgatgttttaga 470  Q
    |||||||||||||| ||||||||||||||||||||    
T  32274434 tactccctccattccttttcttttgatgttttaga 32274468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 2543358 - 2543325
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  2543358 tactccctccattcgttttcttttgatgttttag 2543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 27312114 - 27312147
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  27312114 tactccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 32274711 - 32274678
Alignment:
Q  436 tactccctccattctttttcttttgatgttttag 469  Q
    |||||||||||||| |||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University