View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_82 (Length: 321)
Name: NF11788_high_82
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_82 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 36282798 - 36282497
Alignment:
| Q |
7 |
ctatagactagctatatgtaaaatgtaaagtaggagagnnnnnnnagttagttaggaaatgaagaggcatgtacacaaagaggaagaggattacaattct |
106 |
Q |
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| T |
36282798 |
ctatagactagctatatgtaaaatgtaaagtaggagagtttttttaattagttaggaaatgaagaggcatgtacacaaagaggaagaggattacaattct |
36282699 |
T |
|
| Q |
107 |
ctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctacgacttttcttagtaattcaactttagttttctctcatatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
36282698 |
ctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctactacttttcttagtaatttaactttagttttctctcatatg |
36282599 |
T |
|
| Q |
207 |
tttgaaggttgagatttcatttaagaaaaattgagagaacccaaattcttacaaagagatagattttttagaggatgaagggatagattttaggctaaat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36282598 |
tttgaaggttgagatttcatttaagaaaaattgagagaatccaaattcttacaaagagatagattttttagaggatgaa-ggatagattttaggctaaat |
36282500 |
T |
|
| Q |
307 |
tac |
309 |
Q |
| |
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||| |
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| T |
36282499 |
tac |
36282497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 45235079 - 45235027
Alignment:
| Q |
193 |
ttttctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaa |
245 |
Q |
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||||||||| ||||||||| ||||||||||||| || |||||| ||||||||| |
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| T |
45235079 |
ttttctctcttatgtttgatggttgagatttcacttgagaaaacttgagagaa |
45235027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 12906624 - 12906665
Alignment:
| Q |
204 |
atgtttgaaggttgagatttcatttaagaaaaattgagagaa |
245 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
12906624 |
atgtttgatggttgagattacatttaagaaaacttgagagaa |
12906665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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