View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_83 (Length: 319)
Name: NF11788_high_83
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_83 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 50558428 - 50558712
Alignment:
| Q |
1 |
cacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacacccaggagttggacagg |
100 |
Q |
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| T |
50558428 |
cacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacactcaggagttggacagg |
50558527 |
T |
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| Q |
101 |
caccttccacaagccgatcacacaagaacctctcgcatgtattgcagtaaagctgaaatttgataagcattttagtaaagcgtaataaagaacctttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50558528 |
taccttccacaagccgatcacacaagaacctctcgcaggtatcgcagtaaagctgaaatttgataagcattttagtaaagtgtaataaagaacctttctg |
50558627 |
T |
|
| Q |
201 |
aaattttcaactaaacaagagagaggaacaatgtcaaataaatagaaaattgaacacctgctccattgttctctcggagatccat |
285 |
Q |
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| T |
50558628 |
aaattttcaactaaacaagagagaggaacaatgtcaaataaatagaaaattgaacacctgctccattgttctctcggagatccat |
50558712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 29773086 - 29773236
Alignment:
| Q |
11 |
tcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacacccaggagttggacaggcaccttccac |
110 |
Q |
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| T |
29773086 |
tcttcaattctgtcggatttagaaggttgccacagttctcacactgatcccctctggcagaatcatactcacaccctggaattgggcaggtaccctccac |
29773185 |
T |
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| Q |
111 |
aagccgatcacacaagaacctctcgcatgtattgcagtaaagctgaaattt |
161 |
Q |
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| T |
29773186 |
aagtcgatcggctaagaaccttttgcatgtatcgcagtaaagctgaaattt |
29773236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 50558391 - 50558427
Alignment:
| Q |
283 |
catagagcaaaaatttagggagagggttgctaccttg |
319 |
Q |
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| T |
50558391 |
catagagcaaaaatttagggagagggttgctaccttg |
50558427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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