View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_86 (Length: 307)
Name: NF11788_high_86
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_86 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 24134693 - 24134787
Alignment:
| Q |
202 |
tgctatcatcgttagtgtatttataatcctcatagatggaacaaaaccctaaggttcttgcaagaaccattcgccgccagcttcaaattcatctc |
296 |
Q |
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| T |
24134693 |
tgctatcatcgttagtgtatttataatcctcatagatggaacaaaaccctaaggttcttgcaagaaccaatcgccgccagcttcaaattcctctc |
24134787 |
T |
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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 24134510 - 24134580
Alignment:
| Q |
19 |
caattaccctaaggtttaggaaatacataaaataataataaaattctggatatttctgagatacaatattc |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24134510 |
caattaccctaaggtttaggaaatacataaaataataataaaattctggatatttctgagatacaatattc |
24134580 |
T |
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