View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_87 (Length: 305)
Name: NF11788_high_87
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_87 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 46633031 - 46632754
Alignment:
| Q |
18 |
acgattgtatgataaaaactagtactactcacatcatatgcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactcgc |
117 |
Q |
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| T |
46633031 |
acgattgtatgataaaaactagtactactcacatcatatgcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactcgc |
46632932 |
T |
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| Q |
118 |
tgtctttgagtgaaactgccgatctgtcaagcttaattgaccatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcct |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632931 |
tgtctttgagtgaaaccgccgatctgtcaagcttaattgaccatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcct |
46632832 |
T |
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| Q |
218 |
cactggcctaggaacatttcttccttcaaccgaaattctccgccgactcagttgcctctcaaatgaatcaggcctttg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632831 |
cactggcctaggaacatttcttccttcaaccgaaattctccgccgactcagttgcctctcaaatgaatcaggcctttg |
46632754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 43 - 277
Target Start/End: Complemental strand, 15507302 - 15507065
Alignment:
| Q |
43 |
tactcacatcatatgcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcga---accacactcgctgtctttgagtgaaactgccga |
139 |
Q |
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|||||||| ||||| |||||| ||| ||||||| |||| |||||| || | ||||||||| || ||||| ||| || || |||||||||||| || |
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| T |
15507302 |
tactcacactatatgaaacaagagatttgcagtagttagagtttgttagtactgtacttgtggagccaccaccctcactctcattgagtgaaactaagga |
15507203 |
T |
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| Q |
140 |
tctgtcaagcttaattgaccatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttctt |
239 |
Q |
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|| |||||||| ||||||||||||||||||||||| || |||| |||| || ||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
15507202 |
cctatcaagctttattgaccatggatattggtagttttgtgcagtgacaccaacctgtgaagatgacctcatcatcctcactggccttggaacatttctt |
15507103 |
T |
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| Q |
240 |
ccttcaaccgaaattctccgccgactcagttgcctctc |
277 |
Q |
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||||| || ||| ||| ||||||||| |||| ||||| |
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| T |
15507102 |
ccttccacagaagctcttcgccgactcggttgtctctc |
15507065 |
T |
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