View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_high_92 (Length: 283)
Name: NF11788_high_92
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_92 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 13529924 - 13529667
Alignment:
| Q |
9 |
agcagagatcaccttagggacaatttcatcagcatcttttgcaagagctttgtagagtttagctggagccacggttgagacatgttcatcattgaaagta |
108 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13529924 |
agcagaaatcacctttgggacaatttcatcagcatcttttgcaagagctttgtagagtttagctggagccacggttgagacatgttcatcattgaaagta |
13529825 |
T |
|
| Q |
109 |
aaaacacccatgatatatatcaagataattaaaaaggatcaaaatgcaagaagtaaatgaaagaagtggtttataatatgaatacaactaatttagattg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
13529824 |
aaaacacccatgatatatatcaagataattaaaaaggatcaaaattcaagaagtaaatgaaagaagtggtatataatatgaatacaactaatttagtttg |
13529725 |
T |
|
| Q |
209 |
tgatgcggtttatgacatagtgatggatgatatttatagaactttggtaggacctatt |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13529724 |
tgatgcggtttatgacatagtgagggatgatatttatagaactttggtaggacctatt |
13529667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 13536483 - 13536230
Alignment:
| Q |
9 |
agcagagatcaccttagggacaatttcatcagcatcttttgcaagagctttgtagagtttagctggagccacggttgagacatgttcatcattgaaagta |
108 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13536483 |
agcagaaatcacctttgggactatttcatcagcatcttttgcaagagctttgtagagtttagctggagccacggttgagacatgttcatcgttgaaagta |
13536384 |
T |
|
| Q |
109 |
aaaacacccatgatatatatcaagataattaaaaaggatcaaaatgcaagaagtaaatgaaagaagtggtttataatatgaatacaactaatttagattg |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||| || | ||||||||||||||||||||||| | ||| |
|
|
| T |
13536383 |
aaaacacccatgatatatatcaagatagttaaaaaggatcaatatacaagaagaaaatgaaaagagaaatgtataatatgaatacaactaatttcgcttg |
13536284 |
T |
|
| Q |
209 |
tgatg-cggtttatgacatagtgatggatgatatttatagaactttggtaggac |
261 |
Q |
| |
|
||||| ||||||||| || |||| | ||| ||||||||||||||||||||||| |
|
|
| T |
13536283 |
tgatgtgggtttatgagatggtgaggaatggtatttatagaactttggtaggac |
13536230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 13553811 - 13553558
Alignment:
| Q |
9 |
agcagagatcaccttagggacaatttcatcagcatcttttgcaagagctttgtagagtttagctggagccacggttgagacatgttcatcattgaaagta |
108 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13553811 |
agcagaaatcacctttgggacgatttcatcagcatcttttgcaagagctttgtatagtttagctggagccacggttgagacatgttcatcattgaaagta |
13553712 |
T |
|
| Q |
109 |
aaaacacccatgatatatatcaagataattaaaaaggatcaaaatgcaagaagtaaatgaaagaagtggtttataatatgaatacaactaatttaga--t |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||| || |||||||||| ||||||||| || || ||||||| |||||||||| | || | | |
|
|
| T |
13553711 |
aaaacacccatgatatatattaagataaagaa----gattaatatgcaagaagaaaatgaaaggagaagtatataataaaaatacaactagtatataact |
13553616 |
T |
|
| Q |
207 |
tgtgatgcggtttatgacatagtgatggatgatatttatagaactttggtaggaccta |
264 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
13553615 |
tgtgatgcggtttatgacatggtgagggatgctatttatagaacttgagtaggaccta |
13553558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 13541339 - 13541088
Alignment:
| Q |
16 |
atcaccttagggacaatttcatcagcatcttttgcaagagctttgtagagtttagctggagccacggttgagacatgttcatcattgaaagtaaaaacac |
115 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||| || |
|
|
| T |
13541339 |
atcacctttgggatgatttcatcagcatcttttgcaagtgctttgtaaagtttagctggagccacagttgagacatgttcatcaatgaaaacaaaagaac |
13541240 |
T |
|
| Q |
116 |
ccatgatatatatcaagataattaaaaaggatcaaaatgcaagaagtaaatgaaag----aagtggtttataatatgaata---caactaatttagattg |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| ||||||||||||| || | | ||||||||||||| | |||| ||||| ||| |
|
|
| T |
13541239 |
ccatgatatatatcaaga----taaaaaggatcaatatgcaataagtaaatgaaaggagaaattaatgtataatatgaataatgctactattttagtttg |
13541144 |
T |
|
| Q |
209 |
tgatgcggtttatgacatagtgatggatgatatttatagaactttggtaggaccta |
264 |
Q |
| |
|
||||||||||||| ||| | ||| || | |||||||||||||||||||||||||| |
|
|
| T |
13541143 |
tgatgcggtttataacacattgagggttactatttatagaactttggtaggaccta |
13541088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University