View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_high_93 (Length: 282)

Name: NF11788_high_93
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_high_93
NF11788_high_93
[»] chr4 (5 HSPs)
chr4 (16-271)||(4847699-4847954)
chr4 (100-272)||(28395563-28395738)
chr4 (104-225)||(25054270-25054390)
chr4 (16-59)||(5187608-5187651)
chr4 (110-159)||(11809887-11809936)
[»] chr6 (5 HSPs)
chr6 (59-272)||(34350344-34350557)
chr6 (58-171)||(24544615-24544728)
chr6 (72-272)||(15688946-15689134)
chr6 (204-254)||(9373599-9373649)
chr6 (113-141)||(31528826-31528854)
[»] chr5 (9 HSPs)
chr5 (58-269)||(25502038-25502248)
chr5 (59-271)||(25506949-25507161)
chr5 (110-272)||(25725818-25725980)
chr5 (110-272)||(40382767-40382929)
chr5 (105-272)||(10410732-10410898)
chr5 (178-272)||(8081508-8081602)
chr5 (105-271)||(10412305-10412470)
chr5 (59-136)||(25501868-25501945)
chr5 (215-272)||(6742585-6742642)
[»] chr2 (9 HSPs)
chr2 (67-272)||(1015617-1015821)
chr2 (58-272)||(17308581-17308787)
chr2 (125-267)||(33187188-33187330)
chr2 (59-272)||(30191470-30191680)
chr2 (110-272)||(45035094-45035255)
chr2 (110-272)||(45033299-45033460)
chr2 (87-153)||(4399574-4399640)
chr2 (215-272)||(14007782-14007839)
chr2 (215-272)||(3372462-3372519)
[»] chr3 (7 HSPs)
chr3 (59-272)||(28133607-28133820)
chr3 (184-272)||(41874522-41874610)
chr3 (104-272)||(4602226-4602393)
chr3 (111-272)||(27682131-27682291)
chr3 (125-272)||(4609059-4609205)
chr3 (70-139)||(8318536-8318605)
chr3 (216-272)||(26667008-26667064)
[»] chr1 (2 HSPs)
chr1 (110-271)||(44782194-44782355)
chr1 (100-272)||(46679630-46679802)
[»] chr8 (5 HSPs)
chr8 (110-272)||(30634239-30634401)
chr8 (110-271)||(1175048-1175212)
chr8 (177-272)||(1173513-1173608)
chr8 (215-269)||(35673345-35673399)
chr8 (204-269)||(35674850-35674915)
[»] chr7 (3 HSPs)
chr7 (125-272)||(29924590-29924730)
chr7 (59-272)||(21464405-21464612)
chr7 (103-139)||(965019-965055)
[»] scaffold0570 (1 HSPs)
scaffold0570 (59-205)||(3010-3148)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 4847954 - 4847699
Alignment:
Q  16 catatatagagtcgtatgaaaagttagttgataacaaactagctattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4847954 catatatagagtcgtatgaaaagttagttgataacaaactagctattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagt 4847855  T
Q  116 tagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctata 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4847854 tagttagggagttagttactccaagtcactataaataagctacatctatgtactatatcactatcttatatacaattgtttcttggtaatgacttctata 4847755  T
Q  216 gagaattacaaaatctatctttccattgcatttgacctagaaccatggaatccttt 271  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4847754 gagaattacaaaatctatctttccattacatttgacctagaaccatggaatccttt 4847699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 28395738 - 28395563
Alignment:
Q  100 aactatagtggaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttct- 198  Q
    ||||| ||| |||| ||||||||||||||| ||||||||| ||| ||||||||||||||||   |||||||| ||| |||||| ||| || || | |||     
T  28395738 aactagagtagaaaattagttagggagttatttactccaaatcactataaataagctacaccactgtactatttca-tatcttttattcatttctatcta 28395640  T
Q  199 ---tggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
       | || |||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  28395639 tctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatcctttg 28395563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 25054270 - 25054390
Alignment:
Q  104 atagtggaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggta 203  Q
    ||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| |||| ||||| ||| ||||||  |||| ||     
T  25054270 atagtagaacgttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcac-atcttttattcaattgcatctttgtg 25054368  T
Q  204 atgacttctatagagaattaca 225  Q
    |||||||| | |||||||||||    
T  25054369 atgacttccagagagaattaca 25054390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 5187608 - 5187651
Alignment:
Q  16 catatatagagtcgtatgaaaagttagttgataacaaactagct 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5187608 catatatagagtcgtatgaaaagttagttgataacaaactagct 5187651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 11809936 - 11809887
Alignment:
Q  110 gaaagttagttagggagttagttactccaagtcattataaataagctaca 159  Q
    |||||||||||||||||||||||||||||||||| |||||| || |||||    
T  11809936 gaaagttagttagggagttagttactccaagtcactataaacaaactaca 11809887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 59 - 272
Target Start/End: Complemental strand, 34350557 - 34350344
Alignment:
Q  59 tattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagctac 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  34350557 tattagagtatagtgagcataaactagagttacttagtggtaactatagtagaaagttagttagggagttagttactccaaatcattataaataaactac 34350458  T
Q  159 acatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaac 258  Q
    || |||||||||| |||||||||| |||||||||||||||| ||||||||| ||| ||||||||||| || |||| ||||| ||| ||||||||||||||    
T  34350457 acctatgtactatttcactatcttttatacaattgtttcttagtaatgactcctaaagagaattacataaactatttttccgttgtatttgacctagaac 34350358  T
Q  259 catggaatcctttg 272  Q
    ||||||||||||||    
T  34350357 catggaatcctttg 34350344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 24544615 - 24544728
Alignment:
Q  58 ctattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagcta 157  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  24544615 ctattagagtatagtgagaattaactagagttacttagtggtaactatagtagaaagttagttagggagttagttactccaaatcactataaataagcta 24544714  T
Q  158 cacatatgtactat 171  Q
    ||| ||||||||||    
T  24544715 cacctatgtactat 24544728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 272
Target Start/End: Original strand, 15688946 - 15689134
Alignment:
Q  72 tgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactat 171  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||            |||||| ||| |||||||||||||| | ||||||||||    
T  15688946 tgaggataaactagagttacttagtggtaactatagtagaaagttagtta------------ctccaaatcactataaataagctactcctatgtactat 15689033  T
Q  172 atcactatcttatata--caattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcct 269  Q
     |  ||||||| | ||  || || | |||| || |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  15689034 ttt-ctatcttttttattcatttctatctttgtgatgact-ctagagagaattacacaatctatctttccattgcatttgacctagaatcatggaatcct 15689131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 9373649 - 9373599
Alignment:
Q  204 atgacttctatagagaattacaaaatctatctttccattgcatttgaccta 254  Q
    |||||| ||||||| ||||||| | ||||||||||||||||||||||||||    
T  9373649 atgactcctatagaaaattacacattctatctttccattgcatttgaccta 9373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 31528826 - 31528854
Alignment:
Q  113 agttagttagggagttagttactccaagt 141  Q
    |||||||||||||||||||||||||||||    
T  31528826 agttagttagggagttagttactccaagt 31528854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 58 - 269
Target Start/End: Complemental strand, 25502248 - 25502038
Alignment:
Q  58 ctattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagcta 157  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| ||    
T  25502248 ctattagagtatagtgagaataaactagagttacttagtggtaactatagtagaaagttagttagggagttagttactccaattcactataaataagtta 25502149  T
Q  158 cacatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaa 257  Q
    ||  |||||||||| ||  |||||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||||| |||||||||||||||| ||||||    
T  25502148 catctatgtactat-tccatatcttttatacaattgtttcttgataatgactcctagagagaattacacaatctatatttccattgcatttgatctagaa 25502050  T
Q  258 ccatggaatcct 269  Q
    ||||||||||||    
T  25502049 ccatggaatcct 25502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 59 - 271
Target Start/End: Complemental strand, 25507161 - 25506949
Alignment:
Q  59 tattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggag-ttagttactccaagtcattataaataagcta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||| |||||||||||||    
T  25507161 tattagagtatagtgagaataaactagagttacttagtggtaactatagtagaaagttacttagggagtttagttactccaattcactataaataagcta 25507062  T
Q  158 cacatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaa 257  Q
    ||| |||||||||| ||  ||| || |||||||||||||||| ||||||| | | | ||||||||||| |||||||||||||||||||||||| ||| ||    
T  25507061 cacctatgtactat-tccatattttttatacaattgtttctttgtaatgaatcccagagagaattacataatctatctttccattgcatttgatctaaaa 25506963  T
Q  258 ccatggaatccttt 271  Q
    ||||||||||||||    
T  25506962 ccatggaatccttt 25506949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 110 - 272
Target Start/End: Complemental strand, 25725980 - 25725818
Alignment:
Q  110 gaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgact 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  25725980 gaaagttagttagggagttagttactccaagtcactataaataagttacacctatgtactatttcattatcttttatacgattgtttcttggtaatgact 25725881  T
Q  210 tctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
     ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  25725880 cctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 25725818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 110 - 272
Target Start/End: Complemental strand, 40382929 - 40382767
Alignment:
Q  110 gaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgact 209  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||| ||| |||||| | |||||||||||||| ||||||| |    
T  40382929 gaaagttagttagggagttaggtactccaagtcactataaataagctacacctatatactatttcattatcttttttacaattgtttcttagtaatgatt 40382830  T
Q  210 tctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
     ||| ||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||    
T  40382829 cctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttg 40382767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 105 - 272
Target Start/End: Original strand, 10410732 - 10410898
Alignment:
Q  105 tagtggaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaa 204  Q
    |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| |||| ||||| ||| || |||  |||| |  |    
T  10410732 tagtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcac-atcttttattcatttgcatctttggga 10410830  T
Q  205 tgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10410831 tgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatcctttg 10410898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 8081508 - 8081602
Alignment:
Q  178 atcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    ||||| |||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  8081508 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttg 8081602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 271
Target Start/End: Original strand, 10412305 - 10412470
Alignment:
Q  105 tagtggaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaa 204  Q
    |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||| |||||| ||| || |||  |||| || |    
T  10412305 tagtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttca-tatcttttattcatttgcatctttgtga 10412403  T
Q  205 tgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatccttt 271  Q
    | | |  || ||| ||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||    
T  10412404 taattcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatccttt 10412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 25501868 - 25501945
Alignment:
Q  59 tattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactc 136  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  25501868 tattagagtatagtgagaataaactagagttacttagtggtaactatagtagaaatttagttagggagttagttactc 25501945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 6742585 - 6742642
Alignment:
Q  215 agagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    |||||| |||| |||||||||||||||||||||||| ||||||| |||||||| ||||    
T  6742585 agagaaatacacaatctatctttccattgcatttgatctagaactatggaatcgtttg 6742642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 67 - 272
Target Start/End: Original strand, 1015617 - 1015821
Alignment:
Q  67 tatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagctacacatatgt 166  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||||| |||| |||||    
T  1015617 tatagtgagaataaactagagttacttagtggtaactatagtagaaagttagttacggagttagttactccaaatcactataaataagccacacctatgt 1015716  T
Q  167 actatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaat 266  Q
    ||||| ||  |||||| ||||||||||||||||||||| |||| | | ||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  1015717 actat-tccatatcttttatacaattgtttcttggtaacgactccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaat 1015815  T
Q  267 cctttg 272  Q
    ||||||    
T  1015816 cctttg 1015821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 58 - 272
Target Start/End: Original strand, 17308581 - 17308787
Alignment:
Q  58 ctattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagcta 157  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||  |    
T  17308581 ctattagaatatagtgagaataaactagagttacttagtggtaactatagtagaaagttagttagggagttagttactccaaatcactataaataagtca 17308680  T
Q  158 cacatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaa 257  Q
    |||       || | ||| |||||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||| ||||||    
T  17308681 cac-------ctttgtca-tatcttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattgcatttgatctagaa 17308772  T
Q  258 ccatggaatcctttg 272  Q
    | |||||||||||||    
T  17308773 caatggaatcctttg 17308787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 125 - 267
Target Start/End: Complemental strand, 33187330 - 33187188
Alignment:
Q  125 agttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattac 224  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||  || ||| ||||||    
T  33187330 agttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgtttcttggtaatgactcatagagataattac 33187231  T
Q  225 aaaatctatctttccattgcatttgacctagaaccatggaatc 267  Q
    | |||||||||||||||| ||||||||||||||| ||||||||    
T  33187230 acaatctatctttccattacatttgacctagaacaatggaatc 33187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 272
Target Start/End: Original strand, 30191470 - 30191680
Alignment:
Q  59 tattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagctac 158  Q
    ||||||| || |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||  |||| ||| |||||||||   ||    
T  30191470 tattagaatacagtgagaataaactagagttacttagtggtaactagagtagaaagttagttagggatttagttatgccaaatcactataaataaatcac 30191569  T
Q  159 acatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaac 258  Q
     | | |||| ||| | | |||||| |||||||||||||||||||||||| || || ||||||||| | ||||||||||| ||||| |||||| |||||||    
T  30191570 cc-tgtgta-tatttta-tatcttttatacaattgtttcttggtaatgatttttagagagaattatataatctatcttttcattgtatttgatctagaac 30191666  T
Q  259 catggaatcctttg 272  Q
    ||||||||||||||    
T  30191667 catggaatcctttg 30191680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 45035094 - 45035255
Alignment:
Q  110 gaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgact 209  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||| |||  ||||| ||| || |||  |||| || ||||||    
T  45035094 gaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtaatatttca-aatcttttattcatttgcatctttgtgatgact 45035192  T
Q  210 tctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
     ||| |||||| || | |||||||||||||||||||||||| |||||||||||||||||||||    
T  45035193 cctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatcctttg 45035255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 45033299 - 45033460
Alignment:
Q  110 gaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgact 209  Q
    ||||||||||||||||||||||||| |||| ||| | |||||||||||||| |||||||||  ||| |||||| ||| || |||  |||| || ||||||    
T  45033299 gaaagttagttagggagttagttaccccaaatcactgtaaataagctacacctatgtactaattca-tatcttttattcatttgcatctttgtgatgact 45033397  T
Q  210 tctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
     ||| ||| ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||    
T  45033398 cctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttttg 45033460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 4399640 - 4399574
Alignment:
Q  87 gttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataa 153  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  4399640 gttacttagtggtaactggagtagaaagttagttagggagttagttactccaactcactataaataa 4399574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 14007782 - 14007839
Alignment:
Q  215 agagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  14007782 agagaattagacaatccatctttccattgcatttgacctagaaccatggaatcctttg 14007839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 3372519 - 3372462
Alignment:
Q  215 agagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    ||||||||| | ||||||||||||||||| |||||||||||||| |||||||| ||||    
T  3372519 agagaattatagaatctatctttccattgtatttgacctagaactatggaatcttttg 3372462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 59 - 272
Target Start/End: Original strand, 28133607 - 28133820
Alignment:
Q  59 tattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagctac 158  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  28133607 tattagaatatagtgagaataaactagagttacttagtggtaactatagtagaaagttagttagagagttagttactccaagtcactataaataagctac 28133706  T
Q  159 acatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaac 258  Q
    || |||||||||| |||| ||||| ||| ||||||  |||| || |||||| ||| |||||| |||| ||| || ||||||||||||||||| |||||||    
T  28133707 acctatgtactatttcaccatcttttattcaattgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaac 28133806  T
Q  259 catggaatcctttg 272  Q
    ||||||||||||||    
T  28133807 catggaatcctttg 28133820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 41874522 - 41874610
Alignment:
Q  184 tatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874522 tatacaattgtttcttggtaatgactcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 41874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 104 - 272
Target Start/End: Original strand, 4602226 - 4602393
Alignment:
Q  104 atagtggaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggta 203  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||| |||||| |||  |||||  |||| ||     
T  4602226 atagtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttca-tatcttttatttaattgcatctttgtt 4602324  T
Q  204 atgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    ||||||  || |||||| || | ||| || ||||||||||||||||| |||||||||||||||||||||    
T  4602325 atgactcatagagagaactatacaatttacctttccattgcatttgatctagaaccatggaatcctttg 4602393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 272
Target Start/End: Original strand, 27682131 - 27682291
Alignment:
Q  111 aaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgactt 210  Q
    ||||||||||||||||||||||||||||| |||  |||||||||| | || ||||||||||  ||| ||||| ||| || |||  |||| || ||||||     
T  27682131 aaagttagttagggagttagttactccaaatcacaataaataagcaagacctatgtactattccac-atcttttattcatttgcatctttgtgatgactc 27682229  T
Q  211 ctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    ||| |||||| |||| ||| || ||||||||||||||||| |||||||||||||||||||||    
T  27682230 ctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttg 27682291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 272
Target Start/End: Original strand, 4609059 - 4609205
Alignment:
Q  125 agttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattac 224  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||||| ||| |||||| ||| ||||||  |||| || |||||| ||| |||||| ||     
T  4609059 agttagttactccaaatcactataaataagctacacctatgtactatttca-tatcttttattcaattgcatctttgtgatgactgctagagagaactat 4609157  T
Q  225 aaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    | ||| || ||||| ||||||||||| ||||||| || ||||||||||    
T  4609158 acaatttacctttcaattgcatttgatctagaacaattgaatcctttg 4609205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 8318605 - 8318536
Alignment:
Q  70 agtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaa 139  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  8318605 agtgagaataaattagagttacttagtggtaactatagtagaaagttagttaggaagttagttcctccaa 8318536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 26667064 - 26667008
Alignment:
Q  216 gagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    |||||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||    
T  26667064 gagaattacacaatctacctttccatcgcatttgatctagaaccatgaaatcctttg 26667008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 110 - 271
Target Start/End: Complemental strand, 44782355 - 44782194
Alignment:
Q  110 gaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgact 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||| |||||||||||||||| |||||||||    
T  44782355 gaaagttagttagggagttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgtttcttagtaatgact 44782256  T
Q  210 tctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatccttt 271  Q
     ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44782255 cctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatccttt 44782194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 46679630 - 46679802
Alignment:
Q  100 aactatagtggaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttctt 199  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  |||  ||||| ||||||||||||||||    
T  46679630 aactatagtagaaaattagttagggagttagttactccaagtcactataaataagctacacctatgtactacttcatcatcttttatacaattgtttctt 46679729  T
Q  200 ggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  46679730 ggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 46679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 272
Target Start/End: Complemental strand, 30634401 - 30634239
Alignment:
Q  110 gaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgact 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||| |||||||||||||||| |||||||||    
T  30634401 gaaagttagttagggagttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgtttcttagtaatgact 30634302  T
Q  210 tctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
      || ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||    
T  30634301 catagagagaattacagaatctatctttccattgcatttgacctaaaaccatagaatcctttg 30634239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 1175048 - 1175212
Alignment:
Q  110 gaaagttagttagggagttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttgg---taatg 206  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| ||||| |||||||||| ||| |||||| ||||||||||||||||||   |||||    
T  1175048 gaaagttaggtggggagttagttactccaagtcactataaataagttacacctatgtactatttcattatcttttatacaattgtttcttggtaataatg 1175147  T
Q  207 acttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatccttt 271  Q
    ||| ||| | | ||||||| ||||||||||| |||| |||||||||||||||||| |||||||||    
T  1175148 actcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatccttt 1175212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 1173513 - 1173608
Alignment:
Q  177 tatcttatatacaattgtttcttggtaatgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||||| | ||||||| ||| |||||||||||| ||||||  |||||||||||||    
T  1173513 tatcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattgcatttgatctagaattatggaatcctttg 1173608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 35673399 - 35673345
Alignment:
Q  215 agagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcct 269  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||    
T  35673399 agagaattatacaatctatctttccattgcatttgacttagaaccatggaatcct 35673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 35674915 - 35674850
Alignment:
Q  204 atgacttctatagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcct 269  Q
    |||||| ||| ||||||||||| |||||| |||||||||||||||||| |||||||||| ||||||    
T  35674915 atgactcctagagagaattacacaatctacctttccattgcatttgacttagaaccatgcaatcct 35674850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 272
Target Start/End: Original strand, 29924590 - 29924730
Alignment:
Q  125 agttagttactccaagtcattataaataagctacacatatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattac 224  Q
    ||||||||||||||||||| ||||||||||||||||       |||| | | |||||| |||| |||||||| || ||||||||| ||| ||||||||||    
T  29924590 agttagttactccaagtcactataaataagctacac-------ctattttattatcttttatataattgttttttagtaatgactcctagagagaattac 29924682  T
Q  225 aaaatctatctttccattgcatttgacctagaaccatggaatcctttg 272  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||    
T  29924683 acaatctatctttccattgcatttgacctagaactatggaatcctttg 29924730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 272
Target Start/End: Original strand, 21464405 - 21464612
Alignment:
Q  59 tattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagctac 158  Q
    ||||||||||||||||| |||||||||||||||||||| |            |||||||||||||| |||||||||||||| ||| | ||||||||||||    
T  21464405 tattagagtatagtgagaataaactagagttacttagtag------------aaagttagttagggggttagttactccaaatcactgtaaataagctac 21464492  T
Q  159 acatatgtactatatcactatcttatatacaattgttt-----cttggtaatgacttctatagag--aattacaaaatctatctttccattgcatttgac 251  Q
    || |||||||||| | ||| |||| ||| || |  |||     ||| ||||||||| ||| ||||  ||||||| ||||||||||||||||||||||||     
T  21464493 acttatgtactattttact-tcttttattcattcattttctacctttgtaatgactcctagagagagaattacacaatctatctttccattgcatttgat 21464591  T
Q  252 ctagaaccatggaatcctttg 272  Q
    ||||||||||||||| |||||    
T  21464592 ctagaaccatggaattctttg 21464612  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 965019 - 965055
Alignment:
Q  103 tatagtggaaagttagttagggagttagttactccaa 139  Q
    |||||| ||||||||||||||||||||||||||||||    
T  965019 tatagtagaaagttagttagggagttagttactccaa 965055  T

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Target: scaffold0570 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 205
Target Start/End: Complemental strand, 3148 - 3010
Alignment:
Q  59 tattagagtatagtgagcataaactagagttacttagtggtaactatagtggaaagttagttagggagttagttactccaagtcattataaataagctac 158  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||            |||||||||||||| |||||||| |||||    
T  3148 tattagagtatagtgagaataaaccagagttacttagtagtaactatagtagaaagtta------------gttactccaagtcactataaatatgctac 3061  T
Q  159 acatatgtactatatcacta----tcttatatacaattgtttcttggtaat 205  Q
    ||  ||||||||| ||||||    |||| ||||||||||||||||||||||    
T  3060 accgatgtactatttcactatctttcttttatacaattgtttcttggtaat 3010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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