View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_high_97 (Length: 271)
Name: NF11788_high_97
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_97 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 43706192 - 43705984
Alignment:
| Q |
1 |
tgtattcactctccctcttcatctacacgtgaccgccgctcttccctctttctctcatctcgtcgtcaacctccatctagccgctgtccgtcgccggccc |
100 |
Q |
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| T |
43706192 |
tgtattcactctccctcttcatctacacttgaccgccgctcttccctctttctctcatctcgtcgtcaacctccatctagccgctgtccgttgccggccc |
43706093 |
T |
|
| Q |
101 |
tttgcatcaatcatcatcttcattatctttgcaacataaatcaattaaaacactctttcttattcccctattcttgttcgtagtgtacagttttgtttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
43706092 |
tttgcatcaatcatcatcttcattatctttgcaacatcaatcaattaaaacactctttcttattcctctgttcttgttcgtagtgtacaattttgtttct |
43705993 |
T |
|
| Q |
201 |
ctaatcatc |
209 |
Q |
| |
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|| |||||| |
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| T |
43705992 |
ctcatcatc |
43705984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 43706000 - 43705956
Alignment:
| Q |
220 |
ttgtttctctcatcatcaccgtcgatgtctcttcctcttcttctc |
264 |
Q |
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| T |
43706000 |
ttgtttctctcatcatcaccgtcgatgtctcttcctcttcttctc |
43705956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 2581785 - 2581651
Alignment:
| Q |
31 |
gaccgccgctcttccctcttt-ctctcatctcgtcgtcaacctccatctagccgctg-tccgtcgccggccctttgcatcaatcatcatcttcattatct |
128 |
Q |
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|||||||||||||| | |||| ||| ||| || ||||||||||||| | |||||| |||||||||||| || | ||| |||||||||||||||||| |
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| T |
2581785 |
gaccgccgctcttctcccttttctcccatatcatcgtcaacctccacccagccgcccatccgtcgccggctctccgggtcagtcatcatcttcattatct |
2581686 |
T |
|
| Q |
129 |
ttgcaacataaatcaattaaaacactctttcttat |
163 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||| |
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| T |
2581685 |
ttacaacatcaatcaattaaaacactctttcttat |
2581651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 29984089 - 29984190
Alignment:
| Q |
11 |
ctccctcttcatctacacgtgaccgccgctcttccctctttctctcatctcgtcgtcaacctccatctagccgctgtccgtcgccggccctttgcatcaa |
110 |
Q |
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|||||||||||||||||| ||||| ||||||| | ||||||||||| ||||| |||||| ||||| ||||| ||||||||||| ||||||||||||| |
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| T |
29984089 |
ctccctcttcatctacacacaaccgctgctcttctccctttctctcatatcgtcatcaaccaccatccagccgtcgtccgtcgccgaccctttgcatcaa |
29984188 |
T |
|
| Q |
111 |
tc |
112 |
Q |
| |
|
|| |
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|
| T |
29984189 |
tc |
29984190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 6204695 - 6204747
Alignment:
| Q |
107 |
tcaatcatcatcttcattatctttgcaacataaatcaattaaaacactctttc |
159 |
Q |
| |
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||||||||||||||| | || ||| |||||| ||||||||||||||||||||| |
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|
| T |
6204695 |
tcaatcatcatcttcttcatatttacaacatcaatcaattaaaacactctttc |
6204747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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