View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_1 (Length: 1031)

Name: NF11788_low_1
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_1
NF11788_low_1
[»] chr5 (2 HSPs)
chr5 (7-846)||(43568791-43569630)
chr5 (911-1014)||(43569701-43569804)


Alignment Details
Target: chr5 (Bit Score: 812; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 7 - 846
Target Start/End: Original strand, 43568791 - 43569630
Alignment:
Q  7 ggagaagcaaagggtatttctaggttgagaggaacaccaccctgagtggcctcgatgacctcattgataaaattttggcaaaaatgtatggaattaccct 106  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43568791 ggagaagcattgggtaattctaggttgagaggaacaccaccctgagtggcctcgatgacctcattgataaaattttggcaaaaatgtatggaattaccct 43568890  T
Q  107 cgttcaaattcttgtcggtgaattccaagagttcattaacagaaactcttttaacggatacatccatggagtcttcctcgactctggtgaaaacaatggt 206  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43568891 cgttcaaattcttatcggtgaattccaagagttcattaacagaaactcttttaacggatacatccatggagtcttcctcgactctggtgaaaacaatggt 43568990  T
Q  207 gacgatctgggcaagaaccgacttagcacagatctgattggttccgttaactccaccgaggtagacattataacaggttctaacaatctgaacgagacaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43568991 gacgatctgggcaagaaccgacttagcacagatctgattggttccgttaactccaccgaggtagacattataacaggttctaacaatctgaacgagacaa 43569090  T
Q  307 tctccacggatgagaatgcaaggggatctaacagcggaaagaaggactctgaggacgcccaactcgattgcctcctcaccaaggccaccagatttacaga 406  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43569091 tctccacggatgagaacgcaaggggatctaacagcggaaagaaggactctgaggacgcccaactcgattgcctcctcaccaaggccaccagatttacaga 43569190  T
Q  407 tggcatcgatgatattgaagaacaagtgtgaattgatgatctcgccgcgaacaagacccagagagagaagcttaaaggtgcaatcgagagcaggttcaac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43569191 tggcatcgatgatattgaagaacaagtgtgaattgatgatctcgccgcgaacaagacccagagagagaagcttaaaggtgcaatcgagagcaggttcaac 43569290  T
Q  507 aaccttagcgtaagcggagtcaagggcgaggaagagaggttgaaggacatattcagcatctgaggaagggatgcctacaaggggggatttggaatcagaa 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43569291 aaccttagcgtaagcggagtcaagggcgaggaagagaggttgaaggacatattcagcatctgaggaagggatgcctacaaggggagatttggaatcagaa 43569390  T
Q  607 tcatcgcattcggggagagattctagcttgtcgatggtggatttgcaggaagaaacaagttgagaatgcttacgccatgcggcattcttaatgatcttat 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43569391 tcatcgcattcggggagagattctagcttgtcgatggtggatttgcaggaagaaacaagttgagaatgcttacgccatgcgacattcttaatgatcttat 43569490  T
Q  707 cgagtgatggacccaccactcttccacaccgtgaaggacctcccagggattgcgatgccgacattttcaacgatcgatgaatcgatcagtagattggatc 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43569491 cgagtgatggacccaccactcttccacaccgtgaaggacctcccagggattgcgatgccgacattttcaacgatcgatgaatcgatcagtagattggatc 43569590  T
Q  807 atacaaaattcaattcacaaaaataaaactaaacgcgtcc 846  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43569591 atacaaaattcaattcacaaaaataaaactaaacgcgtcc 43569630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 911 - 1014
Target Start/End: Original strand, 43569701 - 43569804
Alignment:
Q  911 agcgagcgtgcatggagcataattaatccactgctccgtcgtttgcctcctcggcatacgtttctgcgtaaataaataaatacttaactccgtcttgcat 1010  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43569701 agcgagcgtgcatggagcataattaatccactgctccgtcgtttgcctcctcggcatacgtttctgcgtaaataaataaatacttaactccgtcttgcat 43569800  T
Q  1011 tttt 1014  Q
    ||||    
T  43569801 tttt 43569804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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