View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_101 (Length: 270)
Name: NF11788_low_101
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_101 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 36282145 - 36282401
Alignment:
| Q |
13 |
cacagagctcaaatagtcatctaaacctacatcataaacaccctccctccaatcaaggatcattctagaataaagtagtctcttcgtcatccaaattgca |
112 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36282145 |
cacaaagctcaaatagtcatgtaaacctacaccataaacaccctccctccaatcaaggatcattctagaataaagtagtttcttcgtcatccaaattgca |
36282244 |
T |
|
| Q |
113 |
actaatcccttctttaaaccaactttcctcaccacccgactcccctgcaccaatcacacaaatccttccaccacattgacgctttactccctcctatcct |
212 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36282245 |
actaatcccttctttaaaccaatttccctcaccacttgactccccttcaccaagcacacaaatccttccaccacattgacgctttactccctcctctcct |
36282344 |
T |
|
| Q |
213 |
aatacgattattatatttgaaaattgaactcaggttctagattcctcttaatttaaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| |
|
|
| T |
36282345 |
aatacgattattatatttgaaaattgaactcaagttccagattcttcttagtttaaa |
36282401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University