View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_104 (Length: 259)
Name: NF11788_low_104
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_104 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 35769905 - 35769673
Alignment:
| Q |
20 |
aatcctaagttttgtttcactgattttgagagtggttttccattgtaagttatttatggttccttttgttctcatttaatctgcctcctaaagcatttat |
119 |
Q |
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| T |
35769905 |
aatcctaagttttgtttcactgattttgagagtggttttccattgtaagttatttatggttccttttgttctcatttaatctgcctcctaaagcatttat |
35769806 |
T |
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| Q |
120 |
tagagttgatttgccactgcctgaagggcctaaaattgctaacaattcacccggaaatacaatgccaataatccctttcaagattagtttctcctcagaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35769805 |
tagagttgatttgccactgcctgaagggcctaaaattactaacaattcacccggaaatacaatgccaataatccctttcaagattagtttctcctcagaa |
35769706 |
T |
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| Q |
220 |
tttatagcctttttgcataacaagcctttgctt |
252 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35769705 |
tttatagcctttttgcataacaagcctttgctt |
35769673 |
T |
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