View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_11 (Length: 664)

Name: NF11788_low_11
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_11
NF11788_low_11
[»] chr8 (4 HSPs)
chr8 (217-532)||(27267872-27268187)
chr8 (217-532)||(6579297-6579612)
chr8 (217-548)||(12664010-12664341)
chr8 (218-338)||(27005048-27005167)
[»] chr4 (4 HSPs)
chr4 (217-532)||(29710944-29711259)
chr4 (217-370)||(1690173-1690329)
chr4 (218-338)||(35536076-35536195)
chr4 (1-49)||(28563916-28563964)
[»] chr6 (1 HSPs)
chr6 (232-370)||(16484195-16484333)
[»] chr5 (2 HSPs)
chr5 (232-370)||(21818577-21818715)
chr5 (305-377)||(22008826-22008898)
[»] chr1 (2 HSPs)
chr1 (47-179)||(36676037-36676172)
chr1 (580-630)||(42632216-42632266)
[»] chr7 (4 HSPs)
chr7 (312-412)||(9253070-9253170)
chr7 (304-412)||(9317071-9317179)
chr7 (347-520)||(37276154-37276327)
chr7 (86-167)||(46922039-46922120)
[»] scaffold0194 (1 HSPs)
scaffold0194 (131-164)||(26548-26581)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 217 - 532
Target Start/End: Complemental strand, 27268187 - 27267872
Alignment:
Q  217 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 316  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  27268187 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 27268088  T
Q  317 acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcg 416  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||     
T  27268087 acttacttgaaagaccaaaatcgaaccgtcacagttacattctatttagttttatgagaatccaatggcacaacctctggatataactgttacggcttcc 27267988  T
Q  417 tatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacc 516  Q
    || |||||||||||||||| || ||||||||||||||||||  |||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  27267987 tacgcattgacgaagacgcaggtgaacttggagcgtgattggaggctccataaaaccatttagatgacgaagttgttaaagatgacgacgaattcgcacc 27267888  T
Q  517 tttcattgcttcaatc 532  Q
    ||||||||||||||||    
T  27267887 tttcattgcttcaatc 27267872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 217 - 532
Target Start/End: Original strand, 6579297 - 6579612
Alignment:
Q  217 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 316  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  6579297 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 6579396  T
Q  317 acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcg 416  Q
    |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||     
T  6579397 acttacttgaaagaccaaaatcgaaccgtcacagttacattttatttagttttatgagaatccaatgacacaacctctagatataactgttacggcttcc 6579496  T
Q  417 tatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacc 516  Q
    || ||||||||||| |||| || ||||||||||||||||||  | |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  6579497 tacgcattgacgaatacgcaggtgaacttggagcgtgattggagactccataaaaccatttagatgacgaagttgttaaagatgacggcgaattcgcacc 6579596  T
Q  517 tttcattgcttcaatc 532  Q
    |||||| |||||||||    
T  6579597 tttcatagcttcaatc 6579612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 217 - 548
Target Start/End: Original strand, 12664010 - 12664341
Alignment:
Q  217 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 316  Q
    |||||||||||||  |||||| ||||||||||||| |||||||| ||| |||||||| | ||||||||  |||||||||||||||  |||||||||||||    
T  12664010 aggcaaaatccaaagtatatttagaaatgcacatgtagcaaacagaatctgattgaaacgttggttcatgacacaaaacacaatcgaaaaattcacaatc 12664109  T
Q  317 acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcg 416  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||     
T  12664110 acttacttgaaataccaaaatcgaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacctctagataaaactgttacggtttct 12664209  T
Q  417 tatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacc 516  Q
    || |||| |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||  ||||||||| ||||||||  | ||||| ||||    
T  12664210 tacgcatcgacgaagacgccggcgaacttggagcgtgattggaggctccataaaaccatttagatgatgaagttgttaaagatgacaacaaattcacacc 12664309  T
Q  517 tttcattgcttcaatcaatctgaatcattttg 548  Q
    ||||  ||||| |||| |||| ||||||||||    
T  12664310 tttcgctgcttaaatcgatctaaatcattttg 12664341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 218 - 338
Target Start/End: Original strand, 27005048 - 27005167
Alignment:
Q  218 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 317  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||  ||||||||  ||||||| ||||||||||||| |||||||||    
T  27005048 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgttggttcatgacacaaa-cacaatcacaaaaatcacaatca 27005146  T
Q  318 cttacttgaaagaccaaaatc 338  Q
    |||||||||||||||||||||    
T  27005147 cttacttgaaagaccaaaatc 27005167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 217 - 532
Target Start/End: Original strand, 29710944 - 29711259
Alignment:
Q  217 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 316  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  29710944 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 29711043  T
Q  317 acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcg 416  Q
    |||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||     
T  29711044 acttacttgaaagaccaaaatcgaaccgtcacagttacattttatttagttttatgagaatccaatggtacaacctctagatataactgttacggcttcc 29711143  T
Q  417 tatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacc 516  Q
    || |||||||||||||||| || ||||||||||||||||||  |||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||    
T  29711144 tacgcattgacgaagacgcaggtgaacttggagcgtgattggaggctccataaaaccatttagatgacgaagttgttaaagatgacagcgaattcgcacc 29711243  T
Q  517 tttcattgcttcaatc 532  Q
    |||||| |||||||||    
T  29711244 tttcatagcttcaatc 29711259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 1690329 - 1690173
Alignment:
Q  217 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacac---aatcacaaaattcaca 313  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||| ||||  ||||||||||    || |||||||||||||    
T  1690329 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttgattcatgacacaaaacaacagaaccacaaaattcaca 1690230  T
Q  314 atcacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagtttta 370  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  1690229 atcacttacttgaaaggccaaaatcgaaccgtcacagttacattctctttagtttta 1690173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 218 - 338
Target Start/End: Complemental strand, 35536195 - 35536076
Alignment:
Q  218 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 317  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||   |||||||  ||||||| ||||||||||||| |||||||||    
T  35536195 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgatggttcatgacacaaa-cacaatcacaaaaatcacaatca 35536097  T
Q  318 cttacttgaaagaccaaaatc 338  Q
    |||||||||||||||||||||    
T  35536096 cttacttgaaagaccaaaatc 35536076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28563916 - 28563964
Alignment:
Q  1 cctctccgcaatcttggaagaaattttctctaaaaaatttcagttagat 49  Q
    |||||||||| ||||||||||| |||||||| || ||||||||||||||    
T  28563916 cctctccgcagtcttggaagaacttttctctgaataatttcagttagat 28563964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 232 - 370
Target Start/End: Complemental strand, 16484333 - 16484195
Alignment:
Q  232 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatcacttacttgaaagac 331  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| ||||||||||||| | |||||||||||||||    
T  16484333 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcacagtaacttacttgaaagac 16484234  T
Q  332 caaaatcaaaccgtcacagttacattctctttagtttta 370  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  16484233 caaaatcgaaccgtcacagttacattctctttagtttta 16484195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 21818577 - 21818715
Alignment:
Q  232 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatcacttacttgaaagac 331  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| ||||||||||||| | |||||||||||||||    
T  21818577 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcacagtaacttacttgaaagac 21818676  T
Q  332 caaaatcaaaccgtcacagttacattctctttagtttta 370  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  21818677 caaaatcgaaccgtcacagttacattctctttagtttta 21818715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 22008826 - 22008898
Alignment:
Q  305 aaattcacaatcacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaat 377  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||| |||||||||||||||||||||||||||    
T  22008826 aaattcacaatcacttacttcaaataccgaaaccaaaccgacacaattacattctctttagttttatgagaat 22008898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 36676037 - 36676172
Alignment:
Q  47 gatccaccagcatcatcagatttcacctctc---ctttcctaacaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaa 143  Q
    ||||||||||| ||||||||||||||| |||   ||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  36676037 gatccaccagcttcatcagatttcaccactctttctttcttagcaccaagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaa 36676136  T
Q  144 ttatagaagcttgatcaccctgcattcaccaacaac 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  36676137 ttatagaagcttgatcaccctgcattcaccaacaac 36676172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 580 - 630
Target Start/End: Complemental strand, 42632266 - 42632216
Alignment:
Q  580 aaacttgttcaaccaatcaacctcatgaaacatgcaaatatcaataacaca 630  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42632266 aaacttgttcaaccaatcaacctgatgaaacatgcaaatatcaataacaca 42632216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 312 - 412
Target Start/End: Complemental strand, 9253170 - 9253070
Alignment:
Q  312 caatcacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacgg 411  Q
    ||||||||||||||| ||||| |||   ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9253170 caatcacttacttgatagaccgaaactgaaccgtcacagtttcattctctttagttttatgagaatccaatggtacaacttctagataaaactgttacgg 9253071  T
Q  412 c 412  Q
    |    
T  9253070 c 9253070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 9317071 - 9317179
Alignment:
Q  304 aaaattcacaatcacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaac 403  Q
    |||||| |||||||||||||||| ||||| |||   ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  9317071 aaaattgacaatcacttacttgatagaccgaaacttaaccgtcacagtttcattctctttagttttatgagaatccaatagtacaacttctagataaaac 9317170  T
Q  404 tgttacggc 412  Q
    |||||||||    
T  9317171 tgttacggc 9317179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 347 - 520
Target Start/End: Original strand, 37276154 - 37276327
Alignment:
Q  347 acagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcgtatgcattgacgaagacgccggcgaacttg 446  Q
    |||||||||||||||||||| || ||||||||||| ||||||  |||| |||||||||| | ||||||  |  ||| |||||| |||||||||||||| |    
T  37276154 acagttacattctctttagtcttttgagaatccaacggcacagtttctggataaaactgctgcggcttactccgcactgacgacgacgccggcgaactcg 37276253  T
Q  447 gagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacctttc 520  Q
    |||| | ||||   | | | ||||||  |||||||| |||||||||||||||||| ||||||||  ||||||||    
T  37276254 gagcatcattggaagtttcgtgaaactgtttagatgacgaagttgttgaagatgaaggcgaattgacacctttc 37276327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 46922120 - 46922039
Alignment:
Q  86 acaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaattatagaagcttgatcaccctgca 167  Q
    ||||||| ||| || | ||| ||||||||||  || |||||||||||||| || ||||| || || ||||||||||||||||    
T  46922120 acaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca 46922039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 26581 - 26548
Alignment:
Q  131 atagcccctccaattatagaagcttgatcaccct 164  Q
    ||||||||||||||||||||||||||||||||||    
T  26581 atagcccctccaattatagaagcttgatcaccct 26548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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