View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_116 (Length: 246)
Name: NF11788_low_116
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_116 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 45236099 - 45236344
Alignment:
| Q |
1 |
tcaaacatcaaagagaatgcatgcataaggttgaaaagtggggctccatcaatataatgagactaagggtcaaatgaattggcattttgtatcatattgt |
100 |
Q |
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| T |
45236099 |
tcaaacatcaaagagaatgcatgcataaggttgaaaagtggggctccatcaatataatgagactaagggtcaaatgaattggcattttgtatcatattgt |
45236198 |
T |
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| Q |
101 |
cctccactttgtccaatctgcatcaattggtcaacttcaaatagagaatacttctatcacaagttacttactaggctgtgtagtgcgcaccgttcctttt |
200 |
Q |
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| T |
45236199 |
cctccactttgtccaatctgcatcaattggtcaacttcaaatagagaatacttctatcacaagttatttactaggctgtgtagtgcgcaccgttcctttt |
45236298 |
T |
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| Q |
201 |
atctcttctgtcatggcttcaataatgaatgtattggatcatttaa |
246 |
Q |
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| T |
45236299 |
atctcttctgtcatggcttcaataatgaatgtattggatcatttaa |
45236344 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 783527 - 783584
Alignment:
| Q |
80 |
tggcattttgtatcatattgtcctccactttgtccaatctgcatcaattggtcaactt |
137 |
Q |
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| T |
783527 |
tggcattttgtatcattttgtcctccacttagttcactcagcatcaattggtcaactt |
783584 |
T |
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