View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_118 (Length: 244)
Name: NF11788_low_118
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_118 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 37072 - 37285
Alignment:
| Q |
21 |
gaacaaaatttcaagaaccaatatgctttccaaggcatgcatgcacggcaggatcaaaagtaacaaagtattataaccaaaaattagagatgatcacata |
120 |
Q |
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| T |
37072 |
gaacaaaacttcaagagccaatatgctttccaaggcatgcatgcacggcaggatcaaaagtaacaaagtattataaccacaaattagagatgatcacata |
37171 |
T |
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| Q |
121 |
caagtaattacaattaatcatagaattagatacaacagaataggatagttgaggaagttaaatacatcacatacatggaatatttctgttttgttttggt |
220 |
Q |
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| T |
37172 |
caagtaattacaattaatcatagaattagatacaacagaataggatagttgaggaagttaaatacatcacatacatggaatatttctgttttgttttggt |
37271 |
T |
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| Q |
221 |
tttcctatgcttct |
234 |
Q |
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||||||||| |||| |
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| T |
37272 |
tttcctatgtttct |
37285 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 565208 - 565287
Alignment:
| Q |
114 |
tcacatacaagtaattacaattaatcatagaattagatacaacagaataggatagttgaggaagttaaatacatcacata |
193 |
Q |
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||||||| | ||| ||| |||||||| ||||||||||||||||| |||| || |||| |||| ||||||||||||||| |
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| T |
565208 |
tcacatataggtacttaaaattaatcttagaattagatacaacataataagactgttgtggaaactaaatacatcacata |
565287 |
T |
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