View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_119 (Length: 243)

Name: NF11788_low_119
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_119
NF11788_low_119
[»] chr5 (24 HSPs)
chr5 (135-225)||(15036915-15037005)
chr5 (135-225)||(15039412-15039502)
chr5 (135-225)||(15041909-15041999)
chr5 (139-215)||(15044366-15044442)
chr5 (87-209)||(20854843-20854966)
chr5 (83-179)||(235578-235676)
chr5 (83-179)||(236896-236994)
chr5 (83-151)||(17071210-17071279)
chr5 (83-149)||(7632081-7632148)
chr5 (83-125)||(237844-237886)
chr5 (83-125)||(19128756-19128798)
chr5 (83-125)||(19359690-19359732)
chr5 (83-125)||(28705902-28705944)
chr5 (83-151)||(34600247-34600316)
chr5 (83-149)||(36038681-36038748)
chr5 (83-125)||(1281822-1281864)
chr5 (83-125)||(10554508-10554550)
chr5 (81-123)||(19366591-19366633)
chr5 (83-125)||(38056780-38056822)
chr5 (83-113)||(43510975-43511005)
chr5 (83-146)||(29046014-29046079)
chr5 (83-118)||(17071824-17071860)
chr5 (83-123)||(27364512-27364552)
chr5 (85-125)||(28705153-28705193)
[»] chr2 (23 HSPs)
chr2 (5-75)||(3910729-3910799)
chr2 (83-179)||(1297090-1297188)
chr2 (87-179)||(9275577-9275671)
chr2 (83-143)||(12725619-12725680)
chr2 (83-126)||(11751091-11751134)
chr2 (83-125)||(20432391-20432433)
chr2 (83-146)||(29559421-29559485)
chr2 (83-126)||(22301181-22301224)
chr2 (83-126)||(27177899-27177942)
chr2 (86-155)||(9276322-9276392)
chr2 (83-125)||(23857047-23857089)
chr2 (83-146)||(29512358-29512422)
chr2 (83-146)||(29719433-29719497)
chr2 (83-126)||(9540318-9540361)
chr2 (83-149)||(15902107-15902174)
chr2 (83-155)||(1296365-1296439)
chr2 (83-151)||(11750243-11750313)
chr2 (90-151)||(18174666-18174728)
chr2 (83-125)||(36238753-36238795)
chr2 (83-155)||(15774190-15774262)
chr2 (83-124)||(24121314-24121355)
chr2 (83-115)||(19428188-19428220)
chr2 (90-126)||(26752021-26752057)
[»] chr7 (31 HSPs)
chr7 (85-209)||(46428175-46428300)
chr7 (83-155)||(37950460-37950533)
chr7 (83-152)||(3772522-3772592)
chr7 (83-155)||(27948432-27948505)
chr7 (89-179)||(25343295-25343387)
chr7 (83-179)||(25342482-25342581)
chr7 (83-125)||(16664149-16664191)
chr7 (83-125)||(17638509-17638551)
chr7 (139-209)||(23902662-23902732)
chr7 (83-155)||(30660578-30660652)
chr7 (83-125)||(37395523-37395565)
chr7 (83-125)||(45099917-45099959)
chr7 (83-151)||(30661452-30661521)
chr7 (83-120)||(33781585-33781622)
chr7 (83-146)||(45161955-45162019)
chr7 (83-149)||(3688370-3688437)
chr7 (83-126)||(38225286-38225329)
chr7 (83-118)||(47171437-47171472)
chr7 (83-125)||(3903363-3903405)
chr7 (83-125)||(13785617-13785659)
chr7 (83-125)||(14305076-14305118)
chr7 (83-125)||(19068419-19068461)
chr7 (83-144)||(24453730-24453792)
chr7 (83-171)||(18977746-18977834)
chr7 (83-170)||(37706413-37706502)
chr7 (94-165)||(40273557-40273630)
chr7 (83-146)||(7668469-7668532)
chr7 (83-115)||(9749902-9749934)
chr7 (98-149)||(14686132-14686184)
chr7 (86-118)||(15305296-15305328)
chr7 (83-126)||(46428840-46428884)
[»] chr1 (33 HSPs)
chr1 (105-209)||(46812126-46812231)
chr1 (83-155)||(49680797-49680870)
chr1 (98-193)||(168891-168987)
chr1 (135-209)||(11704122-11704196)
chr1 (83-126)||(36390390-36390433)
chr1 (83-149)||(11704807-11704874)
chr1 (83-126)||(12760762-12760805)
chr1 (92-172)||(10120778-10120860)
chr1 (83-125)||(13142691-13142733)
chr1 (83-125)||(17172686-17172728)
chr1 (83-125)||(25733204-25733246)
chr1 (83-146)||(30932797-30932862)
chr1 (83-146)||(4433849-4433913)
chr1 (83-146)||(7406231-7406295)
chr1 (83-149)||(7558434-7558502)
chr1 (83-115)||(36688402-36688434)
chr1 (83-149)||(7559198-7559265)
chr1 (83-125)||(24991956-24991998)
chr1 (83-125)||(25468496-25468538)
chr1 (83-125)||(27256736-27256778)
chr1 (94-151)||(30663355-30663413)
chr1 (83-125)||(46391890-46391932)
chr1 (94-146)||(10121554-10121607)
chr1 (94-146)||(13262830-13262883)
chr1 (84-125)||(28182096-28182137)
chr1 (83-151)||(34309227-34309296)
chr1 (83-146)||(169629-169693)
chr1 (83-146)||(4439208-4439272)
chr1 (83-146)||(8987776-8987840)
chr1 (83-126)||(17171916-17171960)
chr1 (85-125)||(19172599-19172639)
chr1 (83-115)||(26119428-26119460)
chr1 (83-115)||(31572480-31572512)
[»] chr4 (32 HSPs)
chr4 (94-209)||(47785738-47785854)
chr4 (83-155)||(26147025-26147098)
chr4 (84-149)||(2446160-2446226)
chr4 (83-125)||(31329741-31329783)
chr4 (83-151)||(47688476-47688546)
chr4 (83-125)||(53773610-53773652)
chr4 (83-151)||(7841531-7841600)
chr4 (83-151)||(12920271-12920340)
chr4 (83-151)||(20774177-20774246)
chr4 (83-124)||(40495082-40495123)
chr4 (85-118)||(47687898-47687931)
chr4 (83-115)||(46169014-46169046)
chr4 (83-126)||(142547-142590)
chr4 (83-153)||(52871285-52871356)
chr4 (83-125)||(53772793-53772836)
chr4 (98-175)||(5046455-5046533)
chr4 (83-125)||(8248544-8248586)
chr4 (83-125)||(8266209-8266251)
chr4 (83-125)||(12368679-12368721)
chr4 (100-161)||(16903630-16903692)
chr4 (83-125)||(16903692-16903734)
chr4 (83-113)||(43147273-43147303)
chr4 (83-125)||(53732422-53732464)
chr4 (83-155)||(11938698-11938771)
chr4 (94-170)||(32089591-32089668)
chr4 (99-171)||(56262481-56262554)
chr4 (83-115)||(1466027-1466059)
chr4 (83-115)||(3654020-3654052)
chr4 (83-123)||(5591057-5591097)
chr4 (83-115)||(24008380-24008412)
chr4 (83-115)||(44470160-44470192)
chr4 (83-123)||(48127273-48127313)
[»] chr8 (16 HSPs)
chr8 (83-179)||(38576269-38576367)
chr8 (83-155)||(8996966-8997039)
chr8 (83-146)||(41974627-41974691)
chr8 (83-126)||(27441453-27441496)
chr8 (83-126)||(27442163-27442206)
chr8 (94-168)||(31602014-31602090)
chr8 (83-126)||(9197082-9197125)
chr8 (83-125)||(3165145-3165187)
chr8 (83-125)||(3291557-3291599)
chr8 (83-152)||(31642082-31642152)
chr8 (83-124)||(39860097-39860138)
chr8 (89-125)||(14825636-14825672)
chr8 (83-115)||(14826195-14826227)
chr8 (83-115)||(28930864-28930896)
chr8 (83-115)||(32979059-32979091)
chr8 (83-170)||(37064804-37064891)
[»] chr6 (13 HSPs)
chr6 (83-152)||(26528809-26528879)
chr6 (83-152)||(10171262-10171332)
chr6 (83-124)||(25060802-25060843)
chr6 (83-146)||(19310987-19311051)
chr6 (83-152)||(10171961-10172032)
chr6 (83-152)||(12344880-12344950)
chr6 (83-146)||(19323768-19323832)
chr6 (83-115)||(21133260-21133292)
chr6 (83-115)||(25061583-25061615)
chr6 (83-152)||(26529508-26529579)
chr6 (83-114)||(33435326-33435357)
chr6 (83-116)||(18227718-18227751)
chr6 (83-115)||(4940258-4940290)
[»] chr3 (21 HSPs)
chr3 (135-209)||(29853983-29854057)
chr3 (83-126)||(13477044-13477087)
chr3 (83-125)||(48648190-48648232)
chr3 (83-124)||(6775255-6775296)
chr3 (84-148)||(14871141-14871206)
chr3 (83-171)||(37988195-37988284)
chr3 (83-126)||(20212967-20213010)
chr3 (83-172)||(54458640-54458731)
chr3 (84-126)||(8949923-8949965)
chr3 (83-125)||(21726754-21726796)
chr3 (83-125)||(21727553-21727595)
chr3 (83-152)||(48764464-48764534)
chr3 (99-171)||(48507009-48507082)
chr3 (89-126)||(52605506-52605543)
chr3 (83-146)||(264454-264517)
chr3 (83-185)||(23706765-23706868)
chr3 (83-185)||(23725221-23725324)
chr3 (83-185)||(23743677-23743780)
chr3 (83-146)||(31115601-31115665)
chr3 (83-146)||(31974638-31974702)
chr3 (88-116)||(43202830-43202858)
[»] scaffold0504 (1 HSPs)
scaffold0504 (83-142)||(5385-5445)
[»] scaffold0002 (1 HSPs)
scaffold0002 (83-161)||(428888-428968)
[»] scaffold0176 (2 HSPs)
scaffold0176 (83-125)||(26578-26620)
scaffold0176 (83-123)||(27552-27592)
[»] scaffold0086 (1 HSPs)
scaffold0086 (83-125)||(8315-8357)
[»] scaffold0418 (1 HSPs)
scaffold0418 (83-124)||(6909-6950)
[»] scaffold2007 (1 HSPs)
scaffold2007 (83-146)||(737-801)
[»] scaffold0096 (1 HSPs)
scaffold0096 (83-125)||(39882-39924)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 15036915 - 15037005
Alignment:
Q  135 caccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgcgtgagcttttctttcatgcaatgtttt 225  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15036915 caccaaatctcatccctcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgtgtgagcttttctttcatgcaatgtttt 15037005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 15039412 - 15039502
Alignment:
Q  135 caccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgcgtgagcttttctttcatgcaatgtttt 225  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15039412 caccaaatctcatccctcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgtgtgagcttttctttcatgcaatgtttt 15039502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 15041909 - 15041999
Alignment:
Q  135 caccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgcgtgagcttttctttcatgcaatgtttt 225  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15041909 caccaaatctcatccctcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgtgtgagcttttctttcatgcaatgtttt 15041999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 15044366 - 15044442
Alignment:
Q  139 aaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgcgtgagcttttctttcat 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15044366 aaatctcatccctcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgtgtgagcttttctttcat 15044442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 20854966 - 20854843
Alignment:
Q  87 tatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggt 185  Q
    |||||||||| || |||||||||||||||||| | || | ||| | || |||||||||| | ||||| ||||||| | ||||||| |||| ||| |||||    
T  20854966 tatatatgagatatgatccgttgacaccaggtgttaatggattcgttgacaccaaatctgaaccgtctatctattcattccaaagtcacaaattattggt 20854867  T
Q  186 gtagtgaactcgcgtgagcttttc 209  Q
    |||||||||| ||||||| |||||    
T  20854866 gtagtgaactagcgtgagtttttc 20854843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 235578 - 235676
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaatct-atttaatccaaaggcacatatt 179  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| | || |||||||||||| ||||| || | |||||||| |||||| ||||||    
T  235578 tatatatatatgagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctatttcatttaatcaaaaggctcatatt 235676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 236994 - 236896
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaatct-atttaatccaaaggcacatatt 179  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| |  | |||||||||||| ||||| || | |||||||| |||||| ||||||    
T  236994 tatatatatatgagttaggatccattgacaccaggtgtcaacggattcgtagacaccaaatctcaaccgtctatttcatttaatcaaaaggctcatatt 236896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 17071210 - 17071279
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgt 151  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||| | || |||||||||||| ||||    
T  17071210 tatatatatatgagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgt 17071279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 7632081 - 7632148
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatcc 149  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||| | || |||||||||| ||||    
T  7632081 tatatatatatgagataggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttatcc 7632148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 237886 - 237844
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  237886 tatatatatatgagtcaggatccgttgacaccaggtgtcaacg 237844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 19128756 - 19128798
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  19128756 tatatatatatgagtcaggatccgttgacaccaggtgtcaacg 19128798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 19359690 - 19359732
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  19359690 tatatatatatgagtcaggatccgttgacaccaggtgtcaacg 19359732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 28705944 - 28705902
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  28705944 tatatatatatgagtcaggatccgttgacaccaggtgtcaacg 28705902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 34600247 - 34600316
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgt 151  Q
    ||||||||||| |||||||||||||||||| ||||| |||||| ||| | || |||||||||||| ||||    
T  34600247 tatatatatataagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgt 34600316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 36038681 - 36038748
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatcc 149  Q
    ||||||||||||||   ||||||||||||||||||||||||| |||| | |  |||||||||||||||    
T  36038681 tatatatatatgagaggggatccgttgacaccaggtatcaacggattcgttaacaccaaatctcatcc 36038748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 1281822 - 1281864
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||| |||||||| |||||||||||| ||||||    
T  1281822 tatatatatatgagataggatccattgacaccaggtgtcaacg 1281864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 10554508 - 10554550
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  10554508 tatatatatatgagacaggatccgttgacaccaggtgtcaacg 10554550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 19366633 - 19366591
Alignment:
Q  81 tgtatatatatatgagttaggatccgttgacaccaggtatcaa 123  Q
    ||||||| | |||||||||||||||||||||||||||| ||||    
T  19366633 tgtatatttttatgagttaggatccgttgacaccaggtgtcaa 19366591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 38056780 - 38056822
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||    
T  38056780 tatatatatatgagataggatctgttgacaccaggtgtcaacg 38056822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 113
Target Start/End: Complemental strand, 43511005 - 43510975
Alignment:
Q  83 tatatatatatgagttaggatccgttgacac 113  Q
    |||||||||||||||||||||||||||||||    
T  43511005 tatatatatatgagttaggatccgttgacac 43510975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 29046014 - 29046079
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||| |||| |||||||||||||||||||| ||||| |||| | || ||||||||||||    
T  29046014 tatatatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 29046079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 17071860 - 17071824
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggt 118  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17071860 tatatatatatagagttaggatccgttgacaccaggt 17071824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 27364552 - 27364512
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaa 123  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  27364552 tatatatatatgagacaggatccgttgacaccaggtgtcaa 27364512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 28705153 - 28705193
Alignment:
Q  85 tatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||| || ||||||||||||||||| ||||||    
T  28705153 tatatatatgagtcagtatccgttgacaccaggtgtcaacg 28705193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 3910799 - 3910729
Alignment:
Q  5 gggttagtttatggtgagataatgagagaaacagatataagtcacgtcttagtacctcttttttgaatcgt 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3910799 gggttagtttatggtgagataatgagagaaacagatataagtcacgtcttagtacctcttttttgaatcgt 3910729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 1297188 - 1297090
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaa-tctatttaatccaaaggcacatatt 179  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| | || |||||||||||| || |||| | ||||||||| |||||| ||||||    
T  1297188 tatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 1297090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 9275577 - 9275671
Alignment:
Q  87 tatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaa-tctatttaatccaaaggcacatatt 179  Q
    |||||||||||||||||||||||||||||||| ||||| |||| | || |||||||||||| || |||| | ||||||||| |||||| ||||||    
T  9275577 tatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 9275671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 12725680 - 12725619
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatc 143  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||    
T  12725680 tatatatatatgagttaggatccgttgacaccaggtgtcaacggatttgttgacaccaaatc 12725619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 11751134 - 11751091
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  11751134 tatatatatatgagttaggatccgttgacaccaggtgtcaacga 11751091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 20432433 - 20432391
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  20432433 tatatatatatgagttaagatccgttgacaccaggtatcaacg 20432391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 29559485 - 29559421
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctca 146  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||| | || ||||||||||||    
T  29559485 tatatatatatgagttaggatctgttgacaccaggtgtcaacgaattcgttgacaccaaatctca 29559421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 22301181 - 22301224
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  22301181 tatatatatatgagtcaggatccgttgacaccaggtgtcaacga 22301224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 27177899 - 27177942
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  27177899 tatatatatatgagataggatccgttgacaccaggtgtcaacga 27177942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 9276392 - 9276322
Alignment:
Q  86 atatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaat 155  Q
    |||||||||||| |||||||||||||||||||| |||||| ||| | || |||||||||||| || |||||    
T  9276392 atatatatgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaat 9276322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 23857089 - 23857047
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  23857089 tatatatatatgagttaggatccgttgacacctggtgtcaacg 23857047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 29512358 - 29512422
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctca 146  Q
    ||||||||||||||| | |||||||||||||| ||| |||||| ||||| || ||||||||||||    
T  29512358 tatatatatatgagtcatgatccgttgacacctggtgtcaacgaatttgttgacaccaaatctca 29512422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 29719433 - 29719497
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||||||  |||||||||||||||||||| ||||| |||| | || ||||||||||||    
T  29719433 tatatatatatgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 29719497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 9540318 - 9540361
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||||||  |||||||||||||||||||| |||||||    
T  9540318 tatatatatatgagacaggatccgttgacaccaggtgtcaacga 9540361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 15902107 - 15902174
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacgatt-tgatggcaccaaatctcatcc 149  Q
    ||||||||||||||  |||||||||||||||||||| |||||| || |  || |||||||||||||||    
T  15902107 tatatatatatgagacaggatccgttgacaccaggtgtcaacggttatattgacaccaaatctcatcc 15902174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 1296365 - 1296439
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaat 155  Q
    ||||||||||| |||| |||||||||||||||||||| |||||| ||| | || |||||||||||| || |||||    
T  1296365 tatatatatatagagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaat 1296439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 11750243 - 11750313
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgt 151  Q
    ||||||||||| |||||||||||| |||||||||||| ||||| |||| | || |||||||||||| ||||    
T  11750243 tatatatatatagagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgt 11750313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 18174728 - 18174666
Alignment:
Q  90 atatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgt 151  Q
    ||||||||||||||||||||||| ||||| |||||| ||| | || |||||||||||| ||||    
T  18174728 atatgagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgt 18174666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 36238795 - 36238753
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||| | |||||| |||||||||||||||||||    
T  36238795 tatatatatatgagatgggatccattgacaccaggtatcaacg 36238753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 15774190 - 15774262
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaat 155  Q
    ||||||||||| || ||||||||||||||||| ||| |||||| ||||| || |||||||||||| || |||||    
T  15774190 tatatatatat-agataggatccgttgacacctggtgtcaacgaatttgttgacaccaaatctcaaccatcaat 15774262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 24121355 - 24121314
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac 124  Q
    ||||||||||||||| ||||||| |||||||||||| |||||    
T  24121355 tatatatatatgagtcaggatccattgacaccaggtgtcaac 24121314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 19428220 - 19428188
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||||| |||||||||||||||    
T  19428220 tatatatatatgagttatgatccgttgacacca 19428188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 26752021 - 26752057
Alignment:
Q  90 atatgagttaggatccgttgacaccaggtatcaacga 126  Q
    |||||||| |||||||||||||||||||| |||||||    
T  26752021 atatgagtcaggatccgttgacaccaggtgtcaacga 26752057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 46428175 - 46428300
Alignment:
Q  85 tatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctatttaatccaaaggcacatattgttg 183  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||| | || |||||||||||| || || || |||||||||||||||||||||||  ||    
T  46428175 tatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatctatatatttaatccaaaggcacatattaatg 46428274  T
Q  184 gtgtagtgaactcgcgtgagcttttc 209  Q
    ||||||||| || ||||||| |||||    
T  46428275 gtgtagtgagctggcgtgaggttttc 46428300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 37950533 - 37950460
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaat 155  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||||||||||| |||||    
T  37950533 tatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaat 37950460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 3772592 - 3772522
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtc 152  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||| | || |||||||||||| |||||    
T  3772592 tatatatatatgagttaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatctcaaccgtc 3772522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 27948432 - 27948505
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaat 155  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||| | || |||||||||||| || |||||    
T  27948432 tatatatatatgagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccttcaat 27948505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 25343295 - 25343387
Alignment:
Q  89 tatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaa-tctatttaatccaaaggcacatatt 179  Q
    |||||||||||||||||||||||||||||| ||||| |||| | || |||||||||||| || |||| | ||||||||| |||||| ||||||    
T  25343295 tatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 25343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 25342482 - 25342581
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaa-tctatttaatccaaaggcacatatt 179  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||| | || |||||||||||| || |||| | ||||||||| |||||| ||||||    
T  25342482 tatatatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 25342581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 16664191 - 16664149
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  16664191 tatatatatatgagttaggatccgttgacaccaggtgtcaacg 16664149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 17638551 - 17638509
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  17638551 tatatatatatgagttaggatccgttgacaccaggtgtcaacg 17638509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 23902732 - 23902662
Alignment:
Q  139 aaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgcgtgagcttttc 209  Q
    |||||||| ||||| |||||||||||| ||||||||| |||||||||||| |||||| || |||| |||||    
T  23902732 aaatctcaaccgtctatctatttaatcaaaaggcacagattgttggtgtattgaactagcttgagtttttc 23902662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 30660578 - 30660652
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaat 155  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||| | || ||||||||||||||| |||||    
T  30660578 tatatatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaat 30660652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 37395565 - 37395523
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  37395565 tatatatatatgagttaggatccgttgacaccaggtgtcaacg 37395523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 45099959 - 45099917
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  45099959 tatatatatatgagtcaggatccgttgacaccaggtgtcaacg 45099917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 30661521 - 30661452
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgt 151  Q
    ||||||||||||||  |||||||||||||||||||| ||||| |||| | || |||||||||||| ||||    
T  30661521 tatatatatatgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgt 30661452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 33781585 - 33781622
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtat 120  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33781585 tatatatatatgagttaggatccgttgacatcaggtat 33781622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 45161955 - 45162019
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||||||||||||||| |||||||||||| | ||| |||| | || ||||||||||||    
T  45161955 tatatatatatgagttaggatccattgacaccaggtgttaacggattcgttgacaccaaatctca 45162019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 3688370 - 3688437
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatcc 149  Q
    ||||||||||||||  |||||||||||||||||| ||||||| |||| | || |||||||||| ||||    
T  3688370 tatatatatatgagacaggatccgttgacaccagatatcaacggattcgttgacaccaaatcttatcc 3688437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 38225286 - 38225329
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||||||| | |||||||||||||||||| |||||||    
T  38225286 tatatatatatgagtcatgatccgttgacaccaggtgtcaacga 38225329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 47171472 - 47171437
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggt 118  Q
    ||||||||||||||| ||||||||||||||||||||    
T  47171472 tatatatatatgagtcaggatccgttgacaccaggt 47171437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 3903405 - 3903363
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||    
T  3903405 tatatatatataagtcaggatccgttgacaccaggtgtcaacg 3903363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 13785659 - 13785617
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  13785659 tatatatatatgagacaggatccgttgacaccaggtgtcaacg 13785617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 14305076 - 14305118
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||| |||||||||||||||| |||| ||||||    
T  14305076 tatatatatatgagataggatccgttgacactaggtgtcaacg 14305118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 19068461 - 19068419
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  19068461 tatatatatatgagacaggatccgttgacaccaggtgtcaacg 19068419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 24453792 - 24453730
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatct 144  Q
    |||||||||||||| | |||| |||||||||||||| ||||| |||||| || ||||||||||    
T  24453792 tatatatatatgagatgggattcgttgacaccaggtgtcaacggatttgttgacaccaaatct 24453730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 18977834 - 18977746
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctatttaatccaaagg 171  Q
    ||||||||||| ||| ||||||| |||||||||||| |||||| ||| | |  |||||||||||| || ||||| | |||||||||||||    
T  18977834 tatatatatat-agtcaggatccattgacaccaggtgtcaacggattcgttaacaccaaatctcaaccatcaatttttttaatccaaagg 18977746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 37706413 - 37706502
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaatctatttaatccaaag 170  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| |||| | |  |||||||| ||| || ||||| | ||||||||||||    
T  37706413 tatatatatatagagtcaggatccattgacaccaggtatcaacggattcgttaacaccaaatttcaaccatcaatttttttaatccaaag 37706502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 40273557 - 40273630
Alignment:
Q  94 gagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccg-tcaatctatttaatc 165  Q
    ||||||||||||||||||||||||| |||| | ||| | || |||||||||||| ||| |||||||| ||||||    
T  40273557 gagttaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccgttcaatctaattaatc 40273630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 7668469 - 7668532
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||| ||| |||||||||||||||||||| ||||| |||| | || ||||||||||||    
T  7668469 tatatatatat-agtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 7668532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 9749902 - 9749934
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  9749902 tatatatatatgagtcaggatccgttgacacca 9749934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 14686132 - 14686184
Alignment:
Q  98 taggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatcc 149  Q
    |||||||||||||||||| || ||||| |||||| || |||||||||||||||    
T  14686132 taggatccgttgacaccaagtgtcaacggatttgttgacaccaaatctcatcc 14686184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 15305296 - 15305328
Alignment:
Q  86 atatatatgagttaggatccgttgacaccaggt 118  Q
    ||||||||||||||| |||||||||||||||||    
T  15305296 atatatatgagttagaatccgttgacaccaggt 15305328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 46428884 - 46428840
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||| |||| |||||||||||||||||||| |||||||    
T  46428884 tatatatatatagagtcaggatccgttgacaccaggtgtcaacga 46428840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 46812231 - 46812126
Alignment:
Q  105 cgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgcgtgag 203  Q
    |||| ||||||||| |||||| ||| | || |||||||||||| ||||| |||||||||||| ||||||||| ||| ||||||||||||||| |||||||    
T  46812231 cgttaacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctatctatttaatctaaaggcacagattattggtgtagtgaactagcgtgag 46812132  T
Q  204 cttttc 209  Q
     |||||    
T  46812131 tttttc 46812126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 49680797 - 49680870
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaat 155  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||||||||||| |||||    
T  49680797 tatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaat 49680870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 168891 - 168987
Alignment:
Q  98 taggatccgttgacaccaggtatcaacgatttgatgg-caccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaa 193  Q
    ||||||||||||||||||||| ||| ||  || || | |||||||||||| ||||  |||||||||||||||||||||| ||||| |||||||||||    
T  168891 taggatccgttgacaccaggtgtcagcggattcattgacaccaaatctcaaccgtttatctatttaatccaaaggcacaaattgtgggtgtagtgaa 168987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 11704122 - 11704196
Alignment:
Q  135 caccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgcgtgagcttttc 209  Q
    |||||||| ||| || || ||||||||||||||||||||||||||  |||||||||||||| ||||||| |||||    
T  11704122 caccaaatttcaaccatctatctatttaatccaaaggcacatattaatggtgtagtgaactggcgtgaggttttc 11704196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 36390433 - 36390390
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  36390433 tatatatatatgagttaggatccgttgacaccaggtgtcaacga 36390390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 11704874 - 11704807
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatcc 149  Q
    ||||||||||||||||||||||| ||||||||| || ||||| |||| | || |||||||||||||||    
T  11704874 tatatatatatgagttaggatccattgacaccaagtgtcaacggattcgttgacaccaaatctcatcc 11704807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 12760762 - 12760805
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    |||||||||||||||||||||||||||||||| ||| |||||||    
T  12760762 tatatatatatgagttaggatccgttgacacctggtgtcaacga 12760805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 10120778 - 10120860
Alignment:
Q  92 atgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaatctat-ttaatccaaaggc 172  Q
    ||||||||||||||||||||||||||| ||||| |||| | || |||||||||   ||||||||| ||| |||||||||||||    
T  10120778 atgagttaggatccgttgacaccaggtgtcaacggattggttgacaccaaatcctttccgtcaatttatgttaatccaaaggc 10120860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 13142733 - 13142691
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  13142733 tatatatatatgagttaggatcccttgacaccaggtgtcaacg 13142691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 17172728 - 17172686
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  17172728 tatatatatatgagataggatccgttgacaccaggtgtcaacg 17172686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 25733246 - 25733204
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  25733246 tatatatatatgagttaagatccgttgacatcaggtatcaacg 25733204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 30932862 - 30932797
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||| |||| |||||||||||||||||||| ||||| |||| | |||||||||||||||    
T  30932862 tatatatatatagagtgaggatccgttgacaccaggtgtcaacggattcgttggcaccaaatctca 30932797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 4433913 - 4433849
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||| || ||||||||||||||||||||| ||||| |||| | || ||||||||||||    
T  4433913 tatatatatataagataggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 4433849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 7406231 - 7406295
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctca 146  Q
    ||||||||||||||| |||||||||||||||||||| | |||| ||| | || ||||||||||||    
T  7406231 tatatatatatgagtcaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatctca 7406295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 7558434 - 7558502
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatcc 149  Q
    ||||||||||| ||| |||||||||||||||||| || ||||| |||||| || |||||||||||||||    
T  7558434 tatatatatatagagataggatccgttgacaccaagtgtcaacggatttgttgacaccaaatctcatcc 7558502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 36688402 - 36688434
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    |||||||||||||||||||||||||||||||||    
T  36688402 tatatatatatgagttaggatccgttgacacca 36688434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 7559265 - 7559198
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatcc 149  Q
    ||||||||||||||  |||||||||||||||||||| ||||| |||  | || |||||||||||||||    
T  7559265 tatatatatatgagacaggatccgttgacaccaggtgtcaacggatccgttgacaccaaatctcatcc 7559198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 24991956 - 24991998
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||| |||||||| |||||||||||| ||||||    
T  24991956 tatatatatatgagataggatccattgacaccaggtgtcaacg 24991998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 25468496 - 25468538
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||    
T  25468496 tatatatatatgagtcaggatccattgacaccaggtgtcaacg 25468538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 27256778 - 27256736
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  27256778 tatatatatatgagacaggatccgttgacaccaggtgtcaacg 27256736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 30663355 - 30663413
Alignment:
Q  94 gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgt 151  Q
    |||| |||||||||||||||||||||||||| |||| | || |||||||||||| ||||    
T  30663355 gagtcaggatccgttgacaccaggtatcaacggattcgttgacaccaaatctcaaccgt 30663413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 46391932 - 46391890
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  46391932 tatatatatatgagacaggatccgttgacaccaggtgtcaacg 46391890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 10121607 - 10121554
Alignment:
Q  94 gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||||||||||||||||| ||||| |||| | || ||||||||||||    
T  10121607 gagttaggatccgttgacaccaggtgtcaacggattggttgacaccaaatctca 10121554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 13262830 - 13262883
Alignment:
Q  94 gagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctca 146  Q
    ||||||||||||||||||||||||| |||||| ||| | || ||||||||||||    
T  13262830 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctca 13262883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 28182137 - 28182096
Alignment:
Q  84 atatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||| |||||| ||||||||||||| ||||||    
T  28182137 atatatatatgagtgaggatctgttgacaccaggtgtcaacg 28182096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 34309296 - 34309227
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgt 151  Q
    ||||||||| ||||  |||||||||||||||||||| ||||| |||| | || |||||||||||| ||||    
T  34309296 tatatatatgtgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgt 34309227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 169693 - 169629
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctca 146  Q
    ||||||| | |||| ||||||||||||||||||||| |||||| ||||  || ||||||||||||    
T  169693 tatatatgtgtgaggtaggatccgttgacaccaggtgtcaacgaatttattgacaccaaatctca 169629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 4439272 - 4439208
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||| || ||||||||||||||||| ||| ||||| |||| | || ||||||||||||    
T  4439272 tatatatatataagataggatccgttgacacctggtgtcaacggattcgttgacaccaaatctca 4439208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 8987776 - 8987840
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||||||| |||||| ||||||| ||||| ||||| |||| | || ||||||||||||    
T  8987776 tatatatatatgagtcaggatcggttgacatcaggtgtcaacggattcgttgacaccaaatctca 8987840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 17171916 - 17171960
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||||    
T  17171916 tatatatatatagagataggatccgttgacaccaggtgtcaacga 17171960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 19172639 - 19172599
Alignment:
Q  85 tatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  19172639 tatatatatgagtcaggatccattgacaccaggtgtcaacg 19172599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 26119460 - 26119428
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  26119460 tatatatatatgagtcaggatccgttgacacca 26119428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 31572512 - 31572480
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  31572512 tatatatatatgagtcaggatccgttgacacca 31572480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 47785854 - 47785738
Alignment:
Q  94 gagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtga 192  Q
    |||| |||||| ||||||||||||| |||||| ||| | || |||||||||||| || || || |||||||||||||||||||||||  |||||||||||    
T  47785854 gagtcaggatctgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatctatatatttaatccaaaggcacatattaatggtgtagtga 47785755  T
Q  193 actcgcgtgagcttttc 209  Q
     || ||||||| |||||    
T  47785754 gctggcgtgaggttttc 47785738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 26147098 - 26147025
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaat 155  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||| | || |||||||||||| || |||||    
T  26147098 tatatatatatgagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccttcaat 26147025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 2446226 - 2446160
Alignment:
Q  84 atatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatcc 149  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| | |  |||||||||||||||    
T  2446226 atatatatatgagttaggatccgttgacaccaggtgtcaacagattcgttaacaccaaatctcatcc 2446160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 31329783 - 31329741
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  31329783 tatatatatatgagtcaggatccgttgacaccaggtgtcaacg 31329741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 47688546 - 47688476
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgt 151  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||| | || |||||||||||| ||||    
T  47688546 tatatatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgt 47688476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 53773652 - 53773610
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  53773652 tatatatatatgagttaggatccgttgacatcaggtgtcaacg 53773610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 7841531 - 7841600
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgt 151  Q
    ||||||||||||||| |||||||||||||| ||||| | ||| |||| | || |||||||||||||||||    
T  7841531 tatatatatatgagtcaggatccgttgacatcaggtgttaacggattcgttgacaccaaatctcatccgt 7841600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 12920340 - 12920271
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgt 151  Q
    |||||||||||||| ||||||| ||||||||||||||| ||| |||| | || |||||||||||| ||||    
T  12920340 tatatatatatgagataggatcggttgacaccaggtattaacagattcgttgacaccaaatctcaaccgt 12920271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 20774246 - 20774177
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgt 151  Q
    ||||||||||||||| ||||||| |||||||||||| ||||| |||| | || |||||||||||| ||||    
T  20774246 tatatatatatgagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgt 20774177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 40495082 - 40495123
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac 124  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  40495082 tatatatatatgagtcaggatccgttgacaccaggtgtcaac 40495123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 47687898 - 47687931
Alignment:
Q  85 tatatatatgagttaggatccgttgacaccaggt 118  Q
    ||||||||||||||||||||||||||||||||||    
T  47687898 tatatatatgagttaggatccgttgacaccaggt 47687931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 46169046 - 46169014
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    |||||||||||||||||||||||||||||||||    
T  46169046 tatatatatatgagttaggatccgttgacacca 46169014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 142590 - 142547
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||    
T  142590 tatatatatatgagataggatccgttgacaccgggtgtcaacga 142547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 52871285 - 52871356
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtca 153  Q
    |||| ||| |||||||| |||||||||||||||||| ||||| |||| | || ||||||||| |||||||||    
T  52871285 tatagataaatgagttaagatccgttgacaccaggtgtcaacggattcgttgacaccaaatcacatccgtca 52871356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 53772793 - 53772836
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  53772793 tatatatatatagagttaggatccgttgacaccaggtgtcaacg 53772836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 5046533 - 5046455
Alignment:
Q  98 taggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaatctatttaatccaaaggcaca 175  Q
    ||||||||||||||||||||||||||| |||| | || |||||||||| |||| || || || |||||| || ||||||    
T  5046533 taggatccgttgacaccaggtatcaacagattcgttgacaccaaatctaatccatctatttaattaatctaatggcaca 5046455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 8248586 - 8248544
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||| | ||||||    
T  8248586 tatatatatatgagtcaggatccgttgacaccagatgtcaacg 8248544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 8266251 - 8266209
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||| | ||||||    
T  8266251 tatatatatatgagtcaggatccgttgacaccagatgtcaacg 8266209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 12368721 - 12368679
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||    
T  12368721 tatatatatatgagtcaggatccgttgacactaggtgtcaacg 12368679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 16903692 - 16903630
Alignment:
Q  100 ggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctattt 161  Q
    |||| |||||||||||||| |||||| ||| | || |||||||||||| ||||||||||||||    
T  16903692 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtcaatctattt 16903630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 16903734 - 16903692
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||    
T  16903734 tatatatatatgagtcaggattcgttgacaccaggtgtcaacg 16903692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 113
Target Start/End: Complemental strand, 43147303 - 43147273
Alignment:
Q  83 tatatatatatgagttaggatccgttgacac 113  Q
    |||||||||||||||||||||||||||||||    
T  43147303 tatatatatatgagttaggatccgttgacac 43147273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 53732422 - 53732464
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  53732422 tatatatatatgagacaggatccgttgacaccaggtgtcaacg 53732464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 11938698 - 11938771
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaat 155  Q
    |||||||||||| ||||||||| ||| ||||||||| |||||| ||| | || |||||||||||| || |||||    
T  11938698 tatatatatatgtgttaggatctgttcacaccaggtgtcaacgaattcgttgacaccaaatctcaaccttcaat 11938771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 32089668 - 32089591
Alignment:
Q  94 gagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctatttaatccaaag 170  Q
    ||||||||||||||||||||||| | |||||| ||| | ||  |||||||| |||||||| || | ||||||||||||    
T  32089668 gagttaggatccgttgacaccagatgtcaacgaattcgttgataccaaatcacatccgtctatttttttaatccaaag 32089591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 56262481 - 56262554
Alignment:
Q  99 aggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctatttaatccaaagg 171  Q
    |||||||||||||||||||| |||| | ||| | || |||||||||||| ||||| || | |||||||||||||    
T  56262481 aggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccgtctatatttttaatccaaagg 56262554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 1466059 - 1466027
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  1466059 tatatatatatgagtcaggatccgttgacacca 1466027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 3654020 - 3654052
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    |||||||||||||| ||||||||||||||||||    
T  3654020 tatatatatatgagataggatccgttgacacca 3654052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 5591097 - 5591057
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaa 123  Q
    ||||||||||||||| | |||||||||||||||||| ||||    
T  5591097 tatatatatatgagtcaagatccgttgacaccaggtgtcaa 5591057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 24008380 - 24008412
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  24008380 tatatatatatgagtcaggatccgttgacacca 24008412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 44470192 - 44470160
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  44470192 tatatatatatgagtcaggatccgttgacacca 44470160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 48127273 - 48127313
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaa 123  Q
    ||||||||||||||| | |||||||||||||||||| ||||    
T  48127273 tatatatatatgagtcaagatccgttgacaccaggtgtcaa 48127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 38576367 - 38576269
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaa-tctatttaatccaaaggcacatatt 179  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| | || |||||||||||| || |||| | ||||||||| |||||| ||||||    
T  38576367 tatatatatatgagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctcatatt 38576269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 8997039 - 8996966
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaat 155  Q
    ||||||||||||||| |||||||||||| ||||||| ||||| |||||| || |||||||||||| || |||||    
T  8997039 tatatatatatgagtcaggatccgttgataccaggtgtcaactgatttgttgacaccaaatctcaaccatcaat 8996966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 41974627 - 41974691
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||||||| |||||||||||||||||||| ||||| |||| | || ||||||||||||    
T  41974627 tatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctca 41974691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 27441453 - 27441496
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  27441453 tatatatatatgagataggatccgttgacaccaggtgtcaacga 27441496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 27442206 - 27442163
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  27442206 tatatatatatgagtcaggatccgttgacaccaggtgtcaacga 27442163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 31602014 - 31602090
Alignment:
Q  94 gagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtc-aatctatttaatccaa 168  Q
    ||||||||||| ||||||||||||| |||||| ||| | || |||||||||||| ||||| ||| ||||||||||||    
T  31602014 gagttaggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccgtctaatttatttaatccaa 31602090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 9197082 - 9197125
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||||||| || ||||||||||||||||| |||||||    
T  9197082 tatatatatatgagtcagaatccgttgacaccaggtgtcaacga 9197125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 3165187 - 3165145
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||    
T  3165187 tatatatatatgagtcaggatccgttgacatcaggtgtcaacg 3165145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 3291599 - 3291557
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    |||||||||||||||||||||| ||||||||||| | ||||||    
T  3291599 tatatatatatgagttaggatctgttgacaccagatgtcaacg 3291557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 31642152 - 31642082
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtc 152  Q
    ||||||||||||||| ||||||| |||||||||| | |||||| ||| | || |||||||||||| |||||    
T  31642152 tatatatatatgagtcaggatccattgacaccagatgtcaacgaattcgttgacaccaaatctcaaccgtc 31642082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 39860097 - 39860138
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac 124  Q
    ||||||||||||||  |||||||||||||||||||| |||||    
T  39860097 tatatatatatgaggcaggatccgttgacaccaggtgtcaac 39860138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 14825636 - 14825672
Alignment:
Q  89 tatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  14825636 tatatgagttaggatccgttgacactaggtgtcaacg 14825672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 14826227 - 14826195
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    |||||||||||||| ||||||||||||||||||    
T  14826227 tatatatatatgagataggatccgttgacacca 14826195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 28930896 - 28930864
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  28930896 tatatatatatgagtcaggatccgttgacacca 28930864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 32979059 - 32979091
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  32979059 tatatatatatgagtcaggatccgttgacacca 32979091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 37064804 - 37064891
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacgatttga-tggcaccaaatctcatccgtcaatctatttaatccaaag 170  Q
    ||||||||||| ||| |||||| ||||||||||||| ||||||| || | || ||||||||| || |||||||| | ||||||| ||||    
T  37064804 tatatatatat-agtcaggatctgttgacaccaggtgtcaacgaattcattgacaccaaatcacaaccgtcaatttttttaatcaaaag 37064891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 26528809 - 26528879
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtc 152  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||| | || |||||||||||| |||||    
T  26528809 tatatatatatgagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaaccgtc 26528879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 10171262 - 10171332
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtc 152  Q
    ||||||||||||||| |||||||||||||||||||| ||||| |||| | || |||||||||||| |||||    
T  10171262 tatatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtc 10171332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 25060802 - 25060843
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac 124  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  25060802 tatatatatatgagttaggatccgttgacaccaggtgtcaac 25060843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 19310987 - 19311051
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||||||| |||||||||||||||||||| | ||| |||||| || ||||||||||||    
T  19310987 tatatatatatgagtcaggatccgttgacaccaggtgttaacggatttgttgacaccaaatctca 19311051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 10172032 - 10171961
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtc 152  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||| | || |||||||||||| |||||    
T  10172032 tatatatatatagagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaaccgtc 10171961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 12344880 - 12344950
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtc 152  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| | ||  ||||||||||| |||||    
T  12344880 tatatatatatgagttaggatccattgacaccaggtgtcaacagattcgttgataccaaatctcaaccgtc 12344950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 19323832 - 19323768
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctca 146  Q
    ||||||||||||||  |||||||||||||||||||| |||||| ||| | || ||||||||||||    
T  19323832 tatatatatatgagacaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctca 19323768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 21133292 - 21133260
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    |||||||||||||||||||||||||||||||||    
T  21133292 tatatatatatgagttaggatccgttgacacca 21133260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 25061615 - 25061583
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    |||||||||||||||||||||||||||||||||    
T  25061615 tatatatatatgagttaggatccgttgacacca 25061583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 26529579 - 26529508
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtc 152  Q
    ||||||||||| |||| |||||||||||||||||||| ||||| |||| | || |||||||||||| |||||    
T  26529579 tatatatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 33435326 - 33435357
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacc 114  Q
    ||||||||||||||||||||||||||||||||    
T  33435326 tatatatatatgagttaggatccgttgacacc 33435357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 18227718 - 18227751
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccag 116  Q
    ||||||||||||||| ||||||||||||||||||    
T  18227718 tatatatatatgagtcaggatccgttgacaccag 18227751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 4940290 - 4940258
Alignment:
Q  83 tatatatatatgagttaggatccgttgacacca 115  Q
    ||||||||||||||| |||||||||||||||||    
T  4940290 tatatatatatgagtcaggatccgttgacacca 4940258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 29853983 - 29854057
Alignment:
Q  135 caccaaatctcatccgtcaatctatttaatccaaaggcacatattgttggtgtagtgaactcgcgtgagcttttc 209  Q
    |||||||||||| ||||| |||||||||||  ||||||||| ||| ||||||||||||||| ||||||| |||||    
T  29853983 caccaaatctcaaccgtctatctatttaattaaaaggcacaaattattggtgtagtgaactagcgtgagtttttc 29854057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 13477044 - 13477087
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  13477044 tatatatatatgagtcaggatccgttgacaccaggtgtcaacga 13477087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 48648190 - 48648232
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  48648190 tatatatatatgagtcaggatccgttgacaccaggtgtcaacg 48648232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 6775255 - 6775296
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac 124  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  6775255 tatatatatatgagttaggatccgttgacaccaaatatcaac 6775296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 14871141 - 14871206
Alignment:
Q  84 atatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatc 148  Q
    ||||||||| |||| |||||||||||||||||||| |||||| ||| | || ||||||||||||||    
T  14871141 atatatataagagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcatc 14871206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 37988284 - 37988195
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctatttaatccaaagg 171  Q
    ||||||||||||||| ||||||| |||||||||||| |||||| ||| | || |||||||||||| || | ||| | ||||||| |||||    
T  37988284 tatatatatatgagtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatctcagccattaatatttttaatctaaagg 37988195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 20212967 - 20213010
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||||||||| || ||||||||||||||||| |||||||    
T  20212967 tatatatatatgagtcagaatccgttgacaccaggtgtcaacga 20213010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 54458731 - 54458640
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaatctat-ttaatccaaaggc 172  Q
    ||||||||||||| |||||||||||||||||| ||| ||||| |||| | || |||||||||   |||||| || ||| |||||||||||||    
T  54458731 tatatatatatgaattaggatccgttgacacctggtgtcaacggattggttgacaccaaatcctttccgtccatttatgttaatccaaaggc 54458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 8949923 - 8949965
Alignment:
Q  84 atatatatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    |||||||||| ||||||||||||||||||||| || |||||||    
T  8949923 atatatatataagttaggatccgttgacaccatgtgtcaacga 8949965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 21726754 - 21726796
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  21726754 tatatatatatgagacaggatccgttgacaccaggtgtcaacg 21726796  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 21727595 - 21727553
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  21727595 tatatatatatgagacaggatccgttgacaccaggtgtcaacg 21727553  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 48764464 - 48764534
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtc 152  Q
    ||||||||||||||| ||||||| |||||| ||||| |||||| ||| | || |||||||||||| |||||    
T  48764464 tatatatatatgagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtc 48764534  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 48507082 - 48507009
Alignment:
Q  99 aggatccgttgacaccaggtatcaacgattt-gatggcaccaaatctcatccgtcaatctatttaatccaaagg 171  Q
    |||||||||||||||||||| |||| || || | || |||||||||||| ||||| || | |||||||||||||    
T  48507082 aggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccgtctatatttttaatccaaagg 48507009  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 52605543 - 52605506
Alignment:
Q  89 tatatgagttaggatccgttgacaccaggtatcaacga 126  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  52605543 tatatgagtcaggatccgttgacaccaggtgtcaacga 52605506  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 264454 - 264517
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaa-cgatttgatggcaccaaatctca 146  Q
    ||||||||||| ||||||||||| |||||||||||| ||||  |||||| || ||||||||||||    
T  264454 tatatatatat-agttaggatccattgacaccaggtgtcaatggatttgttgacaccaaatctca 264517  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 23706868 - 23706765
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaa-tctatttaatccaaaggcacatattg 180  Q
    |||||||||||||||||| ||||||||||| ||||| |||||  ||| | || |||||||||||| || |||| | |||| ||||||| |||||| |||     
T  23706868 tatatatatatgagttagaatccgttgaca-caggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaatccaatggcacagattt 23706770  T
Q  181 ttggt 185  Q
    |||||    
T  23706769 ttggt 23706765  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 23725324 - 23725221
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaa-tctatttaatccaaaggcacatattg 180  Q
    |||||||||||||||||| ||||||||||| ||||| |||||  ||| | || |||||||||||| || |||| | |||| ||||||| |||||| |||     
T  23725324 tatatatatatgagttagaatccgttgaca-caggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaatccaatggcacagattt 23725226  T
Q  181 ttggt 185  Q
    |||||    
T  23725225 ttggt 23725221  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 23743780 - 23743677
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctcatccgtcaa-tctatttaatccaaaggcacatattg 180  Q
    |||||||||||||||||| ||||||||||| ||||| |||||  ||| | || |||||||||||| || |||| | |||| ||||||| |||||| |||     
T  23743780 tatatatatatgagttagaatccgttgaca-caggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaatccaatggcacagattt 23743682  T
Q  181 ttggt 185  Q
    |||||    
T  23743681 ttggt 23743677  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 31115665 - 31115601
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    |||||||||||||||  |||||||||||||| |||| ||||| |||| | || ||||||||||||    
T  31115665 tatatatatatgagtcgggatccgttgacactaggtgtcaacagattcgttgacaccaaatctca 31115601  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 31974638 - 31974702
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||| || |||||||||||||||||| || ||||| |||| | || ||||||||||||    
T  31974638 tatatatatataagataggatccgttgacaccaagtgtcaacggattcgttgacaccaaatctca 31974702  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 43202858 - 43202830
Alignment:
Q  88 atatatgagttaggatccgttgacaccag 116  Q
    |||||||||||||||||||||||||||||    
T  43202858 atatatgagttaggatccgttgacaccag 43202830  T

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Target: scaffold0504 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 5445 - 5385
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaat 142  Q
    ||||||||||||||| |||||||||||||||||||| ||||| |||||| || ||||||||    
T  5445 tatatatatatgagtcaggatccgttgacaccaggtgtcaacggatttgttgacaccaaat 5385  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 428968 - 428888
Alignment:
Q  83 tatatatatat-gagttaggatccgttgacaccaggtatcaacg-atttgatggcaccaaatctcatccgtcaatctattt 161  Q
    ||||||||||| |||| |||||||||||||||| |||||||||| ||| | || |||||||||||| ||| ||||||||||    
T  428968 tatatatatatagagtcaggatccgttgacacccggtatcaacgaattcgttgacaccaaatctcaaccgccaatctattt 428888  T

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Target: scaffold0176 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 26578 - 26620
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  26578 tatatatatatgagtcaggatccgttgacaccaggtgtcaacg 26620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 27592 - 27552
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaa 123  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  27592 tatatatatatgagacaggatccgttgacaccaggtgtcaa 27552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 8357 - 8315
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  8357 tatatatatatgagttaggatccattgacaccaggtgtcaacg 8315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 6950 - 6909
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac 124  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  6950 tatatatatatgagtcaggatccgttgacaccaggtgtcaac 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 737 - 801
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaac-gatttgatggcaccaaatctca 146  Q
    ||||||||||||||| ||||||| |||||||||||| ||||| |||| | || ||||||||||||    
T  737 tatatatatatgagtcaggatccattgacaccaggtttcaacggattcgttgacaccaaatctca 801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 39882 - 39924
Alignment:
Q  83 tatatatatatgagttaggatccgttgacaccaggtatcaacg 125  Q
    ||||||||||||||| || ||||||||||||||||| ||||||    
T  39882 tatatatatatgagtcagaatccgttgacaccaggtgtcaacg 39924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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