View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_122 (Length: 239)
Name: NF11788_low_122
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_122 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26401027 - 26401249
Alignment:
| Q |
1 |
caccattcacatccaacacaatgaaagtgttgggttgcaagaaggcaaccaaatgtcgcaattaggcggcccgcgatgaaagtggaattccaagcaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
26401027 |
caccattcacatccaacacaatgaaagtgttgggttgcaagaaggcaaccaaatgtcgcaattaggcagcccgcgatgaaagcggaattccaagcaaaat |
26401126 |
T |
|
| Q |
101 |
atattaatctttgttgtattgttgataatattgttcaatgatgataaaatctaacctgattaggacaggtatgcgataatcaagcgtaggagaatgtatt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26401127 |
atactaatctttgttgtattgttgataatattgttcaatgatgataaaatctaacctgattaggacaggtatgcgataatcaagcgtaggagaatgtatt |
26401226 |
T |
|
| Q |
201 |
gggtaaaaactcaagattatttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26401227 |
gggtaaaaactcaagattatttt |
26401249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 21013640 - 21013409
Alignment:
| Q |
2 |
accattcacatccaacacaatgaaagtgttgggttgcaagaaggcaaccaaatgtcgcaattag----------gcggcccgcgatgaaagtggaattcc |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
21013640 |
accattcacatccaacacaatgaaagtgttgggttgcaagaaggcaaccaaatgtcgcaattagacggctagaggcggcccgcgatgaaagcagaattcc |
21013541 |
T |
|
| Q |
92 |
aagcaaaatatattaatctttgttgtattgttgataatattgttcaatgatgataaaatctaacctgattaggacaggtatgcgataatcaagcgtagga |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21013540 |
gagcaaaatatattaatctttgttgtattgttgataatattgttcaatgatgatataatctaacctgattaggacaggtatgcgataatcaagcgtagga |
21013441 |
T |
|
| Q |
192 |
gaatgtattgggtaaaaactcaagattatttt |
223 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
21013440 |
gaatgtatcgggtaaaaactcaagattatttt |
21013409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 32661007 - 32661098
Alignment:
| Q |
117 |
tattgttgataatattgttcaatgatgataaaatctaacctgattaggacaggtatgcgataatcaagcgtaggagaatgtattgggtaaaa |
208 |
Q |
| |
|
||||||||||||||| ||||||| | ||||| ||| |||| |||| |||||||||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
32661007 |
tattgttgataatatatttcaatggttataaagtctggcctgggtaggtcaggtatgcgataatcaaacttaggtgaatgtattgggtaaaa |
32661098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 32585606 - 32585644
Alignment:
| Q |
166 |
caggtatgcgataatcaagcgtaggagaatgtattgggt |
204 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
32585606 |
caggtatgcgataatcaaacgtaggtgaatgtattgggt |
32585644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 41151010 - 41151087
Alignment:
| Q |
127 |
aatattgttcaatgatgataaaatctaacctgattaggacaggtatgcgataatcaagcgtaggagaatgtattgggt |
204 |
Q |
| |
|
|||||| ||||||||||||||| ||| || | ||||| |||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
41151010 |
aatatttttcaatgatgataaagtctgacatagttaggtcaggtatgcgataatcaaactcaggcgaatgtattgggt |
41151087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 41166525 - 41166585
Alignment:
| Q |
144 |
ataaaatctaacctgattaggacaggtatgcgataatcaagcgtaggagaatgtattgggt |
204 |
Q |
| |
|
||||| ||| ||||| ||||| ||||||||| |||||||| | |||| ||||||||||||| |
|
|
| T |
41166525 |
ataaagtctgacctggttaggtcaggtatgcaataatcaaacttaggtgaatgtattgggt |
41166585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University