View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_127 (Length: 235)
Name: NF11788_low_127
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_127 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 29207222 - 29207017
Alignment:
| Q |
15 |
aagaataaggtaaggaattacatggtacactaacatgtattactactttgtatgtccatttcatttttcacatttcggtgaatcatttttgtgtttgttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207222 |
aagaataaggtaaggaattacatggtacactaacatgtattactacttagtatgtccatttcatttttcacatttcggtgaatcatttttgtgtttgttt |
29207123 |
T |
|
| Q |
115 |
agggttcaagaaaatctcctacaaaagaaaatacaaaaccacaagaattcaaactccacacacaagaaagagctgtcaaacgtgcaatgttcaactatga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207122 |
agggttcaagaaaatctcctacaaaagaaaatacaaaaccacaagaattcaaactccacacacaagaaagagctgtcaaacgtgcaatgttcaactatga |
29207023 |
T |
|
| Q |
215 |
agtaag |
220 |
Q |
| |
|
|||||| |
|
|
| T |
29207022 |
agtaag |
29207017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 38379049 - 38379170
Alignment:
| Q |
99 |
atttttgtgtttgtttagggttcaagaaaatctcctacaaaagaaaatacaaaaccacaagaattcaaactccacacacaagaaagagctgtcaaacgtg |
198 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
38379049 |
atttttctgtttgttcaggcttcaagaaaatctcctaccaaagaaaatactagaccaaaagaattcaaactccacactcaagaaagagcagtcaaacgtg |
38379148 |
T |
|
| Q |
199 |
caatgttcaactatgaagtaag |
220 |
Q |
| |
|
|||| |||||||| |||||||| |
|
|
| T |
38379149 |
caatattcaactacgaagtaag |
38379170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University