View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_128 (Length: 235)
Name: NF11788_low_128
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_128 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 4855741 - 4855846
Alignment:
| Q |
2 |
ttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcattgtgctttgttctgaactccacttcaaattgtagat |
101 |
Q |
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| T |
4855741 |
ttattccatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacttcaaattgtagat |
4855840 |
T |
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| Q |
102 |
attcat |
107 |
Q |
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||||| |
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| T |
4855841 |
cttcat |
4855846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 4841235 - 4841334
Alignment:
| Q |
2 |
ttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcattgtgctttgttctgaactccacttcaaattgtagat |
101 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4841235 |
ttattgcatgataaatccaatccagtcataatctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtagat |
4841334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 5174288 - 5174190
Alignment:
| Q |
1 |
cttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcattgtgctttgttctgaactccacttcaaattgtag |
99 |
Q |
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| T |
5174288 |
cttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaagagtattcattgtgctttgttctgaactccacttcaaattgtag |
5174190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 5215173 - 5215068
Alignment:
| Q |
2 |
ttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcattgtgctttgttctgaactccacttcaaattgtagat |
101 |
Q |
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| T |
5215173 |
ttattccatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacctcaaattgtagat |
5215074 |
T |
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| Q |
102 |
attcat |
107 |
Q |
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||||| |
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| T |
5215073 |
cttcat |
5215068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 5197029 - 5196931
Alignment:
| Q |
1 |
cttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcattgtgctttgttctgaactccacttcaaattgtag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |
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| T |
5197029 |
cttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacttccaaatgtag |
5196931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 5161343 - 5161249
Alignment:
| Q |
5 |
ttgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcattgtgctttgttctgaactccacttcaaattgtag |
99 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
5161343 |
ttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgctttgttctgaactccacttccaagtgtag |
5161249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5183630 - 5183516
Alignment:
| Q |
1 |
cttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcattgtgctttgttctgaactccacttcaaattgtaga |
100 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| |||| |||||||||||| |||| ||||||||||| |||| |
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| T |
5183630 |
cttattgcatgataaatccaatccagtcatgatctttagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttcaaattctaga |
5183531 |
T |
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| Q |
101 |
tattcatccaccgaa |
115 |
Q |
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| T |
5183530 |
tcttcatccaacgaa |
5183516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 7143491 - 7143411
Alignment:
| Q |
3 |
tattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcattgtgctttgttctgaact |
83 |
Q |
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|||||||||||||||||||||||||||| ||||||| | |||| | | ||||||||| |||| || ||||||||| |||| |
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| T |
7143491 |
tattgcatgataaatccaatccagtcatcatctctaggattttagcgtcgtaaaagtactcatagttctttgttctaaact |
7143411 |
T |
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