View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_132 (Length: 229)

Name: NF11788_low_132
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_132
NF11788_low_132
[»] chr1 (6 HSPs)
chr1 (97-229)||(40807199-40807331)
chr1 (97-229)||(38615940-38616072)
chr1 (15-62)||(46259080-46259127)
chr1 (9-70)||(17257079-17257140)
chr1 (14-54)||(18922928-18922968)
chr1 (24-52)||(19472197-19472225)
[»] chr8 (4 HSPs)
chr8 (97-226)||(42487877-42488006)
chr8 (6-62)||(30503004-30503060)
chr8 (15-64)||(42375970-42376019)
chr8 (6-74)||(29373066-29373134)
[»] chr5 (2 HSPs)
chr5 (97-229)||(41661326-41661458)
chr5 (18-62)||(27408122-27408166)
[»] chr4 (4 HSPs)
chr4 (6-67)||(52116172-52116233)
chr4 (6-67)||(22904576-22904637)
chr4 (6-67)||(22956244-22956305)
chr4 (6-67)||(43441331-43441392)
[»] chr6 (1 HSPs)
chr6 (33-62)||(7898506-7898535)
[»] chr2 (1 HSPs)
chr2 (21-62)||(30995468-30995509)
[»] scaffold0049 (1 HSPs)
scaffold0049 (14-62)||(8993-9041)
[»] chr7 (1 HSPs)
chr7 (12-64)||(21245207-21245259)
[»] chr3 (1 HSPs)
chr3 (14-54)||(51042302-51042342)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 40807331 - 40807199
Alignment:
Q  97 gactgttttggcgtccgttt-ggtgcttgtggctgctggtacagcagctcggatatgtcgctttaagctgcacccttcttgggttgttagtgcttcggct 195  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| || || ||||| |||| ||||| |||||||||| || |||    
T  40807331 gactgttttggcgtcagttttggtgctggtggctgctggtacagcagctgggatatgtccctgtaggctgctccctccttggtttgttagtgcctc-gct 40807233  T
Q  196 gggtttggttttagggtcttgttaggctttgttt 229  Q
    |||||||||||||||| |||||| ||||||||||    
T  40807232 gggtttggttttaggggcttgttcggctttgttt 40807199  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 38615940 - 38616072
Alignment:
Q  97 gactgttttggcgtccgttt-ggtgcttgtggctgctggtacagcagctcggatatgtcgctttaagctgcacccttcttgggttgttagtgcttcggct 195  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| || || ||||| |||| ||||| |||||||||| || |||    
T  38615940 gactgttttggcgtcagttttggtgctggtggctgctggtacagcagctgggatatgtccctgtaggctgctccctccttggtttgttagtgcctc-gct 38616038  T
Q  196 gggtttggttttagggtcttgttaggctttgttt 229  Q
    |||||||||||||||| |||||| | ||||||||    
T  38616039 gggtttggttttaggggcttgttcgactttgttt 38616072  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 46259127 - 46259080
Alignment:
Q  15 attgcttcttgccttttctatgaatggtgttggaatccgagagagtgc 62  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  46259127 attgcttcatgccttttctacgagtggtgttggaatccgagagagtgc 46259080  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 17257079 - 17257140
Alignment:
Q  9 ttgaagattgcttcttgccttttctatgaatggtgttggaatccgagagagtgccttaggag 70  Q
    |||||||||||||||||||| || || || ||||||||||| || || ||||||||| ||||    
T  17257079 ttgaagattgcttcttgcctcttttacgagtggtgttggaacccaagggagtgccttcggag 17257140  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 18922928 - 18922968
Alignment:
Q  14 gattgcttcttgccttttctatgaatggtgttggaatccga 54  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  18922928 gattgcctcttgcctttactatgagtggtgttggaatccga 18922968  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 19472197 - 19472225
Alignment:
Q  24 tgccttttctatgaatggtgttggaatcc 52  Q
    |||||||||||||||||||||||||||||    
T  19472197 tgccttttctatgaatggtgttggaatcc 19472225  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 42487877 - 42488006
Alignment:
Q  97 gactgttttggcgtccgttt-ggtgcttgtggctgctggtacagcagctcggatatgtcgctttaagctgcacccttcttgggttgttagtgcttcggct 195  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| || || ||||| |||| ||||| |||||||||| || |||    
T  42487877 gactgttttggcgtcagttttggtgctggtggctgctggtacagcagctgggatatgtccctgtaggctgctccctccttggtttgttagtgcctc-gct 42487975  T
Q  196 gggtttggttttagggtcttgttaggctttg 226  Q
    |||||||||||||||| |||||| |||||||    
T  42487976 gggtttggttttaggggcttgttcggctttg 42488006  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 30503060 - 30503004
Alignment:
Q  6 agattgaagattgcttcttgccttttctatgaatggtgttggaatccgagagagtgc 62  Q
    ||||||| ||| ||||||| ||| ||||| || ||||||||||||||||||||||||    
T  30503060 agattgaggatagcttcttacctcttctacgagtggtgttggaatccgagagagtgc 30503004  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 42376019 - 42375970
Alignment:
Q  15 attgcttcttgccttttctatgaatggtgttggaatccgagagagtgcct 64  Q
    ||||||||||||||||  |||||||||| ||||||||| ||||| |||||    
T  42376019 attgcttcttgcctttattatgaatggtcttggaatccaagagaatgcct 42375970  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 29373066 - 29373134
Alignment:
Q  6 agattgaagattgcttcttgccttttctatgaatggtgttggaatccgagagagtgccttaggaggtag 74  Q
    ||||||||||||| || | |||| || ||||| ||||||||||| | ||||||||| || |||||||||    
T  29373066 agattgaagattgtttatggcctcttttatgagtggtgttggaacctgagagagtgactgaggaggtag 29373134  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 41661326 - 41661458
Alignment:
Q  97 gactgttttggcgtccgttt-ggtgcttgtggctgctggtacagcagctcggatatgtcgctttaagctgcacccttcttgggttgttagtgcttcggct 195  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||| | ||||||||| || || ||||| |||| ||||| |||||||||| || |||    
T  41661326 gactgttttggcgtcagttttggtgctggtggctgctggtacagcagttgggatatgtccctgtaggctgctccctccttggtttgttagtgcctc-gct 41661424  T
Q  196 gggtttggttttagggtcttgttaggctttgttt 229  Q
    |||||||||||||||| |||||| ||||||||||    
T  41661425 gggtttggttttaggggcttgttcggctttgttt 41661458  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 27408166 - 27408122
Alignment:
Q  18 gcttcttgccttttctatgaatggtgttggaatccgagagagtgc 62  Q
    |||||||| || ||||| || ||||||||||||||||||||||||    
T  27408166 gcttcttgtctcttctacgagtggtgttggaatccgagagagtgc 27408122  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 52116233 - 52116172
Alignment:
Q  6 agattgaagattgcttcttgccttttctatgaatggtgttggaatccgagagagtgccttag 67  Q
    ||||||| ||| |||||||| || ||||||||||||||||||||||||||||| ||| ||||    
T  52116233 agattgatgatagcttcttgtctcttctatgaatggtgttggaatccgagagaatgcattag 52116172  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 22904637 - 22904576
Alignment:
Q  6 agattgaagattgcttcttgccttttctatgaatggtgttggaatccgagagagtgccttag 67  Q
    ||||||| ||| |||||||| || |||||  | |||||||||||||||||||||||| ||||    
T  22904637 agattgaggatagcttcttgtctcttctacaagtggtgttggaatccgagagagtgcgttag 22904576  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 22956305 - 22956244
Alignment:
Q  6 agattgaagattgcttcttgccttttctatgaatggtgttggaatccgagagagtgccttag 67  Q
    ||||||| ||| |||||||| || |||||  | |||||||||||||||||||||||| ||||    
T  22956305 agattgaggatagcttcttgtctcttctacaagtggtgttggaatccgagagagtgcgttag 22956244  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 43441392 - 43441331
Alignment:
Q  6 agattgaagattgcttcttgccttttctatgaatggtgttggaatccgagagagtgccttag 67  Q
    ||||||| ||| | ||||||| | || || || |||||||||||||||||||||||||||||    
T  43441392 agattgaggatagtttcttgcttcttttacgagtggtgttggaatccgagagagtgccttag 43441331  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 7898506 - 7898535
Alignment:
Q  33 tatgaatggtgttggaatccgagagagtgc 62  Q
    ||||||||||||||||||||||||||||||    
T  7898506 tatgaatggtgttggaatccgagagagtgc 7898535  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 30995468 - 30995509
Alignment:
Q  21 tcttgccttttctatgaatggtgttggaatccgagagagtgc 62  Q
    |||||||| || || |||||||||||||||||||||||||||    
T  30995468 tcttgcctattttacgaatggtgttggaatccgagagagtgc 30995509  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 9041 - 8993
Alignment:
Q  14 gattgcttcttgccttttctatgaatggtgttggaatccgagagagtgc 62  Q
    ||||||||||||||||||||| || ||||||||||| ||| || |||||    
T  9041 gattgcttcttgccttttctacgagtggtgttggaacccgtgaaagtgc 8993  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 21245259 - 21245207
Alignment:
Q  12 aagattgcttcttgccttttctatgaatggtgttggaatccgagagagtgcct 64  Q
    |||||||||||||| || |||||||| ||||  |||||||| |||||||||||    
T  21245259 aagattgcttcttgtctattctatgagtggtcgtggaatcctagagagtgcct 21245207  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 51042302 - 51042342
Alignment:
Q  14 gattgcttcttgccttttctatgaatggtgttggaatccga 54  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  51042302 gattgcctcttgcctttactatgagtggtgttggaatccga 51042342  T

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