View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_134 (Length: 224)
Name: NF11788_low_134
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_134 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 4489454 - 4489642
Alignment:
| Q |
22 |
tgatggccttgagggtatcctttgtggagttcttgaagtagagagctaacttgtagttctttgaagtgttgttgtaactttgggctgcaatgtccatggc |
121 |
Q |
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| T |
4489454 |
tgatggccttgagggtatcctttgtggagttcttgaagtagagagctaacttgtagttctttgaagtgttgttgtaactttgggctgcaatgtccatggc |
4489553 |
T |
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| Q |
122 |
tacttcttgttctttcccaatacgagaatcaccatcaatgatcaccccgatggatataactttgttgtctgaattcatagtttcatctc |
210 |
Q |
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| T |
4489554 |
tacttcttgttctttcccaatacgagaatcaccatcaatgatcaccccgatggatataactttgttgtctgaattcatagtttcatctc |
4489642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 4485288 - 4485444
Alignment:
| Q |
22 |
tgatggccttgagggtatcctttgtggagttcttgaagtagagagctaacttgtagttctttgaagtgttgttgtaactttgggctgcaatgtccatggc |
121 |
Q |
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| T |
4485288 |
tgatggccttgagggtatccttggtggaattctgaaaatagagaaccaacttgtagttctttgaagtgttgctgtaactttgggatgcaatttcc---gc |
4485384 |
T |
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| Q |
122 |
tacttcttgttctttcccaatacgagaatcaccatcaatgatcaccccgatggatataac |
181 |
Q |
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| T |
4485385 |
tagttcttgttctttcccaatacgagagttaacatcaacgatcacaccaatggatataac |
4485444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 34604600 - 34604492
Alignment:
| Q |
81 |
tttgaagtgttgttgtaactttgggctgcaatgtccatggctacttcttgttctttcccaatacgagaatcaccatcaatgatcaccccgatggatataa |
180 |
Q |
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| T |
34604600 |
tttgaagtgttattgtaattttgagctgcaatatccatggctactctttgttctttcccaactctagagttaacatcaattattacacctatagatataa |
34604501 |
T |
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| Q |
181 |
ctttgttgt |
189 |
Q |
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| T |
34604500 |
ctttgttgt |
34604492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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