View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_136 (Length: 217)

Name: NF11788_low_136
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_136
NF11788_low_136
[»] chr4 (7 HSPs)
chr4 (15-201)||(54392722-54392908)
chr4 (130-195)||(55414438-55414503)
chr4 (130-201)||(50681107-50681178)
chr4 (131-199)||(35571650-35571718)
chr4 (130-188)||(50662756-50662814)
chr4 (137-201)||(17822890-17822954)
chr4 (130-198)||(21731674-21731742)
[»] chr1 (12 HSPs)
chr1 (130-201)||(24915069-24915140)
chr1 (129-200)||(2777874-2777945)
chr1 (130-201)||(3234033-3234104)
chr1 (134-201)||(17603406-17603473)
chr1 (129-188)||(17778951-17779010)
chr1 (130-201)||(27820355-27820426)
chr1 (130-201)||(37631577-37631648)
chr1 (129-196)||(42174841-42174908)
chr1 (129-195)||(45975677-45975743)
chr1 (130-183)||(7137016-7137069)
chr1 (129-201)||(2294892-2294964)
chr1 (129-201)||(7472292-7472364)
[»] chr8 (4 HSPs)
chr8 (130-201)||(26771246-26771317)
chr8 (130-201)||(27028812-27028883)
chr8 (137-201)||(38602314-38602378)
chr8 (129-178)||(11569474-11569523)
[»] chr2 (4 HSPs)
chr2 (130-201)||(12464491-12464562)
chr2 (130-201)||(43279547-43279616)
chr2 (130-185)||(26202025-26202080)
chr2 (137-201)||(41851516-41851580)
[»] chr6 (8 HSPs)
chr6 (130-202)||(34430479-34430551)
chr6 (129-184)||(31624088-31624143)
chr6 (130-200)||(6536597-6536667)
chr6 (130-200)||(35099019-35099089)
chr6 (132-201)||(6909892-6909961)
chr6 (138-201)||(31624239-31624302)
chr6 (129-187)||(835266-835324)
chr6 (151-201)||(11784069-11784119)
[»] chr5 (11 HSPs)
chr5 (129-201)||(12425552-12425624)
chr5 (130-198)||(23994734-23994802)
chr5 (129-198)||(7984952-7985022)
chr5 (129-178)||(4014441-4014490)
chr5 (151-200)||(32372606-32372655)
chr5 (164-201)||(32859770-32859807)
chr5 (164-201)||(32861942-32861979)
chr5 (164-201)||(32862726-32862763)
chr5 (124-200)||(25461328-25461404)
chr5 (137-201)||(39105445-39105509)
chr5 (129-201)||(39594788-39594860)
[»] chr7 (10 HSPs)
chr7 (130-197)||(43648225-43648292)
chr7 (130-201)||(46280290-46280361)
chr7 (129-201)||(33678761-33678833)
chr7 (129-201)||(44821940-44822012)
chr7 (128-175)||(47130801-47130848)
chr7 (130-200)||(420342-420412)
chr7 (138-202)||(4970819-4970883)
chr7 (137-201)||(40252132-40252196)
chr7 (137-201)||(43694595-43694659)
chr7 (137-177)||(44989703-44989743)
[»] chr3 (7 HSPs)
chr3 (130-201)||(39980710-39980781)
chr3 (130-201)||(47132312-47132383)
chr3 (138-201)||(36189547-36189610)
chr3 (138-201)||(46886718-46886781)
chr3 (129-178)||(39602227-39602276)
chr3 (140-201)||(49034291-49034352)
chr3 (137-201)||(20880457-20880521)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 54392722 - 54392908
Alignment:
Q  15 aagaagtgtaatgctgaatatattgtgaactgatttgaaacagttgggttttcaacaacacaaacctagaaatagctcgatcaatcccttgcattcgcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54392722 aagaagtgtaatgctgaatatattgtgaactgatttgaaacagttgggttttcaacaacacaaacctagaaatagctcgatcaatcccttgcattcgcaa 54392821  T
Q  115 tactcataatagcagttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54392822 tactcataatagcagttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatacaaaaacaattt 54392908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 55414438 - 55414503
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaa 195  Q
    ||||||||||||||||| || |||||||||||| ||||| ||||||  | ||||||||||||||||    
T  55414438 ttttcaacttattttcataagttctccaagataacttatgaaaacaatttatagcatatgcaaaaa 55414503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 50681107 - 50681178
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||| ||||||||| ||||||||||| ||| |||||  ||||| || ||||||||| ||||||||||||    
T  50681107 ttttcaatttattttcataatttctccaatatagcttatataaacaacttatagcatatacaaaaacaattt 50681178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 35571650 - 35571718
Alignment:
Q  131 tttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaat 199  Q
    |||||||||||||||| || ||||| |||||| ||||| ||||||||| ||||| ||| | ||||||||    
T  35571650 tttcaacttattttcacaagttctctaagatagcttatgaaaacagcttatagcttatacgaaaacaat 35571718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 50662756 - 50662814
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatat 188  Q
    ||||||||||||||||| ||||||||||| ||| |||||  ||||| || |||||||||    
T  50662756 ttttcaacttattttcacaatttctccaatatagcttatataaacaacttatagcatat 50662814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 17822890 - 17822954
Alignment:
Q  137 cttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||| || |||||||||||| ||||| |||||| || |||||||||  || ||||||||    
T  17822890 cttattttcataagttctccaagatagcttatgaaaacaacttatagcatataaaataacaattt 17822954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 21731674 - 21731742
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaa 198  Q
    ||||||||||| ||||| || |||||||| ||| ||||| |||||| || |||||| || |||||||||    
T  21731674 ttttcaacttactttcataaattctccaatatagcttataaaaacaacttatagcacatacaaaaacaa 21731742  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 24915069 - 24915140
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||||||| || |||||||||| | ||||| ||||||||| ||||||||| ||||||||||||    
T  24915069 ttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaattt 24915140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 2777945 - 2777874
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaatt 200  Q
    ||||||| |||||||||| || ||||||||| || ||||||||||||||| ||||| ||| |||| ||||||    
T  2777945 gttttcagcttattttcataagttctccaagttaacttattaaaacagcttatagcttatacaaagacaatt 2777874  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 3234033 - 3234104
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||| ||||||||||| || |||||||| ||| ||||| |||||| || ||||||||| ||||||||||||    
T  3234033 ttttctacttattttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaattt 3234104  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 17603406 - 17603473
Alignment:
Q  134 caacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||| || |||||||| ||| ||||| |||||| || ||||||||| ||||||||||||    
T  17603406 caacttattttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaattt 17603473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 17779010 - 17778951
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatat 188  Q
    ||||||| ||||||| ||||| |||||||||||| ||||| ||||| ||| |||||||||    
T  17779010 gttttcaccttatttccaaaaattctccaagatagcttatgaaaactgcttatagcatat 17778951  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 27820355 - 27820426
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||| |||||||||| || |||||||||||| ||||| ||||||||  ||||| ||| || |||||||||    
T  27820355 ttttcagcttattttcataaattctccaagatagcttataaaaacagcatatagcttatacataaacaattt 27820426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 37631577 - 37631648
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||| |||||||||| || |||||||| ||| ||||  ||||||||||||| ||||  ||||||||||||    
T  37631577 ttttcagcttattttcataagttctccaatatagcttacaaaaacagctaatatcatacacaaaaacaattt 37631648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 42174908 - 42174841
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaac 196  Q
    ||||| |||||||||||| || |||||||| ||| ||||| |||||| || ||||||||| |||||||    
T  42174908 gtttttaacttattttcataagttctccaatataacttataaaaacaacttatagcatatacaaaaac 42174841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 45975743 - 45975677
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaa 195  Q
    ||||||| |||||||||| || |||||||||||| ||||| |||||||||  |||| ||| ||||||    
T  45975743 gttttcagcttattttcataaattctccaagatagcttatgaaaacagcttgtagcttatacaaaaa 45975677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 7137016 - 7137069
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatag 183  Q
    |||||| |||||||||| || |||||||||||| ||||| ||||||||| ||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacagcttatag 7137069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 2294964 - 2294892
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||| |||||||||  || ||||||||||||  |||| |||| |||| ||||| ||| ||||||||||||    
T  2294964 gttttcaccttattttcgtaagttctccaagatagtttatgaaaatagcttatagcttatccaaaaacaattt 2294892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 7472364 - 7472292
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||| |||||||||| ||  ||||||||||| |||||  |||||||| ||||  ||| ||||||||||||    
T  7472364 gttttcagcttattttcataagctctccaagatagcttatggaaacagcttatagattatacaaaaacaattt 7472292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 26771317 - 26771246
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||||||| || ||||| || ||||||||| |||| |||| ||||||||| ||||||||||||    
T  26771317 ttttcaacttattttcataagttctctaatatatcttataaaaaaagcttatagcatatacaaaaacaattt 26771246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 27028883 - 27028812
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||| |||||||||| ||  ||||||||||| ||||| ||||||||| ||||||||| || |||||||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaaacaattt 27028812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 38602378 - 38602314
Alignment:
Q  137 cttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||| || |||||||  ||| ||||| ||||||||| ||||||||||||||| ||||||    
T  38602378 cttattttcacaaattctccagtatagcttataaaaacagcttatagcatatgcaaaagcaattt 38602314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 11569474 - 11569523
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagct 178  Q
    ||||||| |||||||||||||| |||||| |||| ||||| |||||||||    
T  11569474 gttttcagcttattttcaaaatctctccatgatagcttatgaaaacagct 11569523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 12464491 - 12464562
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||| |||||||||| || |||||||||||| ||||| |||| |||| ||||||||| ||||||||||||    
T  12464491 ttttcagcttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaattt 12464562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 43279547 - 43279616
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||||||| || |||||||| ||| ||||| |||||| || ||||||||  ||||||||||||    
T  43279547 ttttcaacttattttcacaagttctccaatatagcttataaaaacaacttatagcata--caaaaacaattt 43279616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 26202080 - 26202025
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagca 185  Q
    ||||||||||||||||| || |||||||| ||||||||| |||||| || ||||||    
T  26202080 ttttcaacttattttcataagttctccaatatatcttataaaaacaacttatagca 26202025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 41851580 - 41851516
Alignment:
Q  137 cttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||| ||||| || |||||||||||| ||| | |||||| || ||||||||| ||||||||||||    
T  41851580 cttaatttcataaattctccaagatagcttctgaaaacaacttatagcatatacaaaaacaattt 41851516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 34430479 - 34430551
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaatttt 202  Q
    |||||| |||||||||| || |||||||||||| ||||| |||||| || ||| ||||| |||||||||||||    
T  34430479 ttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataacatatacaaaaacaatttt 34430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 31624143 - 31624088
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagc 184  Q
    |||||||||||||||||| ||||||||||||||| | ||| ||||||||| |||||    
T  31624143 gttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatagc 31624088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 6536667 - 6536597
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaatt 200  Q
    ||||||||||||||||| || |||||||| ||| ||| | |||||| || ||||||||| |||||||||||    
T  6536667 ttttcaacttattttcataaattctccaatatagcttctaaaaacaacttatagcatatacaaaaacaatt 6536597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 35099089 - 35099019
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaatt 200  Q
    |||||||||||||||||||| | ||| |||||| ||||| |||||| || ||| ||||| |||||||||||    
T  35099089 ttttcaacttattttcaaaaatactctaagatagcttatgaaaacaacttataacatatacaaaaacaatt 35099019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 6909892 - 6909961
Alignment:
Q  132 ttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||| |||| ||||| || ||||||||||||| |||| |||||| || ||||||||| ||||||||||||    
T  6909892 ttcagcttaatttcataaattctccaagatatgttatgaaaacaacttatagcatatacaaaaacaattt 6909961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 31624302 - 31624239
Alignment:
Q  138 ttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||| |||||| |||||| | ||||||||||||||||||||  ||| | ||||||||||    
T  31624302 ttattttcataatttcaccaagacagcttattaaaacagctaatagattatacgaaaacaattt 31624239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 835266 - 835324
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcata 187  Q
    ||||||| |||||||||| || |||||||||||| ||||| ||||| ||| ||||||||    
T  835266 gttttcagcttattttcataagttctccaagatagcttatgaaaactgcttatagcata 835324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 11784069 - 11784119
Alignment:
Q  151 ttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||| ||| ||||| ||||||||| ||||||||| ||||||||||||    
T  11784069 ttctccaatatagcttatgaaaacagcttatagcatatacaaaaacaattt 11784119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 12425624 - 12425552
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||||||||||| || |||||||||||| ||| | ||||||||| ||||| ||| | ||||||||||    
T  12425624 gttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaattt 12425552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 23994734 - 23994802
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaa 198  Q
    ||||||||||||||| | ||||||| ||||||| ||| | |||| |||| ||||||||| |||||||||    
T  23994734 ttttcaacttatttttataatttctacaagatagcttgtgaaaatagcttatagcatatacaaaaacaa 23994802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 7985022 - 7984952
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagc-atatgcaaaaacaa 198  Q
    ||||||| |||||||||| || |||||||||||| ||||| |||| |||| |||||  |||||||||||||    
T  7985022 gttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatagctttatgcaaaaacaa 7984952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 4014441 - 4014490
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagct 178  Q
    ||||||| |||||||||| || |||||||||||| ||||| |||||||||    
T  4014441 gttttcagcttattttcataagttctccaagatagcttatgaaaacagct 4014490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 32372655 - 32372606
Alignment:
Q  151 ttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaatt 200  Q
    |||||||||||| ||| | ||||||||| ||||||||| |||||||||||    
T  32372655 ttctccaagataacttgtgaaaacagcttatagcatatacaaaaacaatt 32372606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 32859770 - 32859807
Alignment:
Q  164 cttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  32859770 cttattaaaacagcttatagcatattcaaaaacaattt 32859807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 32861942 - 32861979
Alignment:
Q  164 cttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  32861942 cttattaaaacagcttatagcatattcaaaaacaattt 32861979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 32862726 - 32862763
Alignment:
Q  164 cttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  32862726 cttattaaaacagcttatagcatattcaaaaacaattt 32862763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 25461328 - 25461404
Alignment:
Q  124 tagcagttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaatt 200  Q
    |||| ||||||| |||||||||| || | | ||||||||  |||| ||||||| | ||||| |||||||||||||||    
T  25461328 tagctgttttcagcttattttcataaatacgccaagataggttatgaaaacagtttatagcttatgcaaaaacaatt 25461404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 39105509 - 39105445
Alignment:
Q  137 cttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||| || |||||||||||| ||||| ||||||| | ||||| ||| | ||||||||||    
T  39105509 cttattttcataagttctccaagatagcttatgaaaacagattatagcttatacgaaaacaattt 39105445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 39594860 - 39594788
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||| |||||||||| || |||  ||||||||||||| ||||||||| | | | ||||| ||||||||||    
T  39594860 gttttcagcttattttcataagttcaacaagatatcttatgaaaacagcttacaacttatgcgaaaacaattt 39594788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 43648292 - 43648225
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaaca 197  Q
    ||||||||||||||||| | ||||||||||||| ||||| ||||||||| ||| ||||| | ||||||    
T  43648292 ttttcaacttattttcatattttctccaagatagcttatgaaaacagcttatatcatatacgaaaaca 43648225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 46280290 - 46280361
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||| | |||||||| || |||||||| ||| ||||| ||||||||| ||||||||| ||||||||||||    
T  46280290 ttttcagcctattttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaattt 46280361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 33678833 - 33678761
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||||||||||| || || ||||||||| ||||| ||||||||| ||||| | | ||||||| ||||    
T  33678833 gttttcaacttattttcacaagttttccaagatagcttatgaaaacagcttatagcttttacaaaaaccattt 33678761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 44822012 - 44821940
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||||||||||| || |||||||  ||| ||||| ||||||||| ||| | ||| ||||||||||||    
T  44822012 gttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaattt 44821940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 47130801 - 47130848
Alignment:
Q  128 agttttcaacttattttcaaaatttctccaagatatcttattaaaaca 175  Q
    ||||||||||||||||||| || |||||||||||| ||||| ||||||    
T  47130801 agttttcaacttattttcacaagttctccaagatagcttatgaaaaca 47130848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 420412 - 420342
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaatt 200  Q
    ||||||||||||||||| || |||||||| ||| ||||   ||||| || ||||||||| |||||||||||    
T  420412 ttttcaacttattttcataagttctccaatatagcttacggaaacaacttatagcatatacaaaaacaatt 420342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 4970819 - 4970883
Alignment:
Q  138 ttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaatttt 202  Q
    ||||||||| || ||||| || ||||||||| |||| | || ||||||||| |||||||||||||    
T  4970819 ttattttcataagttctctaatatatcttataaaaagaacttatagcatatacaaaaacaatttt 4970883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 40252132 - 40252196
Alignment:
Q  137 cttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||| || |||||||||||| ||||| |||| |||| ||| ||||| ||||||| ||||    
T  40252132 cttattttcataagttctccaagataacttatgaaaagagcttataacatatacaaaaacgattt 40252196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 43694595 - 43694659
Alignment:
Q  137 cttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||| || |||| | | ||| ||||| ||||||||| ||||||||| ||||||||||||    
T  43694595 cttattttcataagttcttcgatatagcttataaaaacagcttatagcatatacaaaaacaattt 43694659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 44989703 - 44989743
Alignment:
Q  137 cttattttcaaaatttctccaagatatcttattaaaacagc 177  Q
    |||||||||| ||||||| ||||||||||||| ||||||||    
T  44989703 cttattttcataatttctacaagatatcttatgaaaacagc 44989743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 39980781 - 39980710
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||||||| || |||||||| ||| ||||| |||||| || ||||||| | ||||||||||||    
T  39980781 ttttcaacttattttcataagttctccaatatagcttataaaaacaacttatagcatgttcaaaaacaattt 39980710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 47132383 - 47132312
Alignment:
Q  130 ttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||||||||||| || |||||||| ||| ||||| |||||| |  ||||||||| ||||||||||||    
T  47132383 ttttcaacttattttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaaacaattt 47132312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 36189610 - 36189547
Alignment:
Q  138 ttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||||| || |||||||| ||||||||| |||| |||| ||| ||||| ||||||||||||    
T  36189610 ttattttcataagttctccaatatatcttataaaaatagcttatatcatatacaaaaacaattt 36189547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 46886718 - 46886781
Alignment:
Q  138 ttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||||| |||||||||||| ||||| ||||||||| |||||  || |||||| |||||    
T  46886718 ttattttcaaaagttctccaagatagcttatgaaaacagcttatagctcatacaaaaataattt 46886781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 39602227 - 39602276
Alignment:
Q  129 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagct 178  Q
    |||||||||||||||||| || ||||| |||||| ||||| |||||||||    
T  39602227 gttttcaacttattttcataagttctcaaagatagcttatgaaaacagct 39602276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 49034291 - 49034352
Alignment:
Q  140 attttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    ||||||| || |||||||| ||| ||||| |||||| || |||||||||||| |||||||||    
T  49034291 attttcagaagttctccaatatagcttataaaaacaacttatagcatatgcacaaacaattt 49034352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 20880521 - 20880457
Alignment:
Q  137 cttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatgcaaaaacaattt 201  Q
    |||||||||| || |||||||| ||| ||| | ||||||| | ||||||||| ||||||||||||    
T  20880521 cttattttcataagttctccaatatagcttttaaaaacagtttatagcatatacaaaaacaattt 20880457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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