View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_137 (Length: 216)
Name: NF11788_low_137
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_137 |
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Alignment Details
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 50725204 - 50725108
Alignment:
| Q |
1 |
gaataaggatattttttgtcaacaattaagtcaatctagtttccttnnnnnnnnnnnnncttaactcaaattctagtccctatgatttttgtatgga |
97 |
Q |
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| T |
50725204 |
gaataaggatattttttgtcaacacttaagtcaatctagtttccttaaaaaaaaaaaaacataactcagattctagtccctatgatttttgtatgga |
50725108 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 50721145 - 50721102
Alignment:
| Q |
157 |
tatagaagtagtgaaattatggagaacgacattacttctcaaat |
200 |
Q |
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| T |
50721145 |
tatagaagtagtgaaattatggagaacgacattacttctcaaat |
50721102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 50791703 - 50791746
Alignment:
| Q |
157 |
tatagaagtagtgaaattatggagaacgacattacttctcaaat |
200 |
Q |
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| T |
50791703 |
tatagaagtagtgaaattatggagaacgacattacttctcaaat |
50791746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50787646 - 50787687
Alignment:
| Q |
1 |
gaataaggatattttttgtcaacaattaagtcaatctagttt |
42 |
Q |
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| T |
50787646 |
gaataaggatattttttgtcaacacttaagtcaatctagttt |
50787687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 50787708 - 50787743
Alignment:
| Q |
62 |
taactcaaattctagtccctatgatttttgtatgga |
97 |
Q |
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| T |
50787708 |
taactcagattctagtccctatgatttttgtatgga |
50787743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 21347867 - 21347944
Alignment:
| Q |
60 |
cttaactcaaattctagtccctatgatttttgtatggannnnnnnnnnnngtaaaacaaactggagaagacggttgatttg |
140 |
Q |
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| T |
21347867 |
cttaactcagattctagtccctatgatttttgtatgga---tttttttttgtaaaacaaactggagaagacggttgatttg |
21347944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21347806 - 21347852
Alignment:
| Q |
1 |
gaataaggatatttt-ttgtcaacaattaagtcaatctagtttcctt |
46 |
Q |
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| T |
21347806 |
gaataaggatatttttttgtcaacactaaagtcaatctagtttcctt |
21347852 |
T |
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