View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_138 (Length: 214)
Name: NF11788_low_138
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_138 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 39083980 - 39084185
Alignment:
| Q |
9 |
atgaacaagatatatttgatgcttccagtgaagcaagggaagcctattggtttaagcggtgaagaaactcgccgagttcttttgatggttaattctattc |
108 |
Q |
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| T |
39083980 |
atgaacaagatatatttgatgcttccagtgaagcaagggaagcctattggtttaagcggcgaagaaactcgccgagttcttttgatggttaattctattc |
39084079 |
T |
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| Q |
109 |
tgaattctaattatgttttgtgttcttctaagtttcttccttggtttagtagtttatgtcataacagtgaaattgtggagcctcagagaaaggaagaggt |
208 |
Q |
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| T |
39084080 |
tgaattctaattatgttttgtgttcttctaagtttcttccttggtttagtagtttatgtcataacagtgaaattgtggaacctcagagaaaggaagaggt |
39084179 |
T |
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| Q |
209 |
gatgga |
214 |
Q |
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|||||| |
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| T |
39084180 |
gatgga |
39084185 |
T |
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