View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_14 (Length: 631)

Name: NF11788_low_14
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_14
NF11788_low_14
[»] chr6 (9 HSPs)
chr6 (42-624)||(6723871-6724462)
chr6 (507-615)||(26545988-26546095)
chr6 (528-605)||(212003-212080)
chr6 (434-535)||(17533274-17533381)
chr6 (72-211)||(22000498-22000636)
chr6 (434-497)||(1929155-1929217)
chr6 (507-617)||(12311897-12312007)
chr6 (523-617)||(12283608-12283702)
chr6 (498-538)||(211943-211983)
[»] chr1 (8 HSPs)
chr1 (434-616)||(31183590-31183775)
chr1 (437-609)||(29488392-29488569)
chr1 (468-605)||(2136942-2137083)
chr1 (543-619)||(51273186-51273262)
chr1 (434-539)||(22790945-22791053)
chr1 (497-539)||(50709686-50709728)
chr1 (543-579)||(50461121-50461157)
chr1 (468-535)||(16123013-16123084)
[»] chr2 (11 HSPs)
chr2 (437-619)||(36925673-36925856)
chr2 (434-609)||(26352741-26352920)
chr2 (498-615)||(44986533-44986650)
chr2 (508-617)||(45388888-45388997)
chr2 (434-608)||(3353265-3353439)
chr2 (520-605)||(36525847-36525932)
chr2 (547-617)||(18858610-18858680)
chr2 (434-497)||(14749544-14749606)
chr2 (501-607)||(11457964-11458070)
chr2 (434-492)||(45389019-45389076)
chr2 (434-498)||(43344689-43344752)
[»] chr3 (17 HSPs)
chr3 (434-606)||(47014501-47014676)
chr3 (434-606)||(21853839-21854013)
chr3 (497-620)||(31489382-31489505)
chr3 (497-615)||(50387325-50387442)
chr3 (518-615)||(24611339-24611436)
chr3 (434-618)||(21842678-21842863)
chr3 (72-211)||(37983459-37983597)
chr3 (497-607)||(53530563-53530673)
chr3 (72-197)||(17688218-17688342)
chr3 (435-565)||(24121239-24121372)
chr3 (434-617)||(21858320-21858504)
chr3 (497-539)||(43471932-43471974)
chr3 (544-605)||(8913624-8913685)
chr3 (434-498)||(16343146-16343210)
chr3 (468-539)||(1341547-1341622)
chr3 (434-497)||(36172019-36172081)
chr3 (434-499)||(35433483-35433547)
[»] chr7 (7 HSPs)
chr7 (438-607)||(44797994-44798167)
chr7 (438-605)||(31396988-31397158)
chr7 (498-603)||(47277897-47278002)
chr7 (434-539)||(48138659-48138767)
chr7 (507-605)||(22201255-22201353)
chr7 (507-605)||(22236468-22236566)
chr7 (437-497)||(9229429-9229488)
[»] chr8 (10 HSPs)
chr8 (427-605)||(14180223-14180402)
chr8 (434-617)||(37231918-37232104)
chr8 (497-609)||(2813633-2813745)
chr8 (468-617)||(9136558-9136711)
chr8 (497-608)||(31431248-31431359)
chr8 (543-608)||(11558829-11558894)
chr8 (434-565)||(39297500-39297637)
chr8 (470-565)||(22470724-22470822)
chr8 (501-538)||(32579149-32579186)
chr8 (468-585)||(12006871-12006992)
[»] chr4 (11 HSPs)
chr4 (507-617)||(44746553-44746663)
chr4 (430-605)||(21619711-21619888)
chr4 (499-617)||(35823460-35823578)
chr4 (497-607)||(43770428-43770537)
chr4 (434-539)||(10632247-10632355)
chr4 (515-585)||(4775964-4776034)
chr4 (507-610)||(22198747-22198846)
chr4 (434-497)||(47724673-47724735)
chr4 (559-608)||(25204405-25204454)
chr4 (523-588)||(34733923-34733988)
chr4 (476-538)||(38947679-38947745)
[»] scaffold0001 (1 HSPs)
scaffold0001 (497-610)||(394312-394425)
[»] chr5 (9 HSPs)
chr5 (434-616)||(7732361-7732545)
chr5 (528-617)||(41634521-41634610)
chr5 (498-605)||(12848318-12848425)
chr5 (510-584)||(39329596-39329670)
chr5 (507-597)||(8802687-8802777)
chr5 (438-538)||(41634663-41634766)
chr5 (497-573)||(36906776-36906852)
chr5 (507-539)||(39700891-39700923)
chr5 (513-615)||(5836648-5836750)
[»] scaffold0051 (1 HSPs)
scaffold0051 (434-499)||(53789-53854)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 42 - 624
Target Start/End: Original strand, 6723871 - 6724462
Alignment:
Q  42 aataatacataaaatatttaatgaatgtagcagagatgaatgggttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacat 141  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6723871 aataatccataaaatatttaatgaatgtggcagagatgaatgggttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacat 6723970  T
Q  142 ttgaagatggaagtaagcttatggtgtagttgggattggttcctcatgtgcaactttagttttcttttcaattaagaaatgataaccatgtaatctactt 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6723971 ttgaagatggaagtaagcttatggtgtagttgg-attggttcctcatgtgcaactttagttttcttttcaattaagaaatgataaccatgtaatctactt 6724069  T
Q  242 tgtgaatagcaaaaatgtagaaatttatttatgtataggacatatcatattctagagacaatcacaactgtttttagggacatttctcttctttttatgg 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724070 tgtgaatagcaaaaatgtagaaatttatttatgtataggacatatcatattctagagacaatcacaactgtttttagggacatttctcttctttttatgg 6724169  T
Q  342 acaatcaagttaaaaagacatgttggcataatttcacatgttggcatttgtgaggtgaaatactt-ggnnnnnnnnggcatcgatgaccctttaatacta 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||| ||||||||||||    
T  6724170 acaatcaagttaaaaagacatgttggcataatttcacatgttggcatttgtgaggtgaaatacttcaaaaaaaaaaagcatcgatgatcctttaatacta 6724269  T
Q  441 tataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaagttt---------ttatataaatcatattctattttcattc 531  Q
    |||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||   |         |||||||||| |||||||||||||||||    
T  6724270 tataatcataaaagccatcatttacagaaaaataatacatgcaatcaaaatataaaaaaaaataaaaaaaaattatataaattatattctattttcattc 6724369  T
Q  532 atatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctctgctt 624  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  6724370 gtatgttatagtatcagcaaatgcatcaataaaagaactcaatacaaagtttgtttattatttattgattgaatctcctatctctctttgctt 6724462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 507 - 615
Target Start/End: Original strand, 26545988 - 26546095
Alignment:
Q  507 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 606  Q
    ||||||||||||| | |||||| ||||||||||   |||||||| |  ||||| ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  26545988 tataaatcatattatgttttcaatcatatgttaggatatcaacagaaacatca-taaaagaactcaagacaaattttgtttaaaattgattgattgaatc 26546086  T
Q  607 tcctatctc 615  Q
    |||| ||||    
T  26546087 tcctttctc 26546095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 605
Target Start/End: Original strand, 212003 - 212080
Alignment:
Q  528 attcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
    |||||| ||||| | ||||||||||  |||||||||||||||| || |||||||||||||| | ||||||||||||||    
T  212003 attcatctgttagaatatcaacaaacacatcaataaaagaactaaaaacaaagtttgtttaatgttgattgattgaat 212080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 535
Target Start/End: Original strand, 17533274 - 17533381
Alignment:
Q  434 aatactatataattataaaagtcatcatttac--agaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttc 527  Q
    ||||||||||| | ||||||||||  |||||   | |||||||||||||| |||||||||| ||||    |||||||  |||||||||||||||||||||    
T  17533274 aatactatatattcataaaagtcacaatttaataaaaaaaataatacatgtgatcaaaataaaaaatataaagttttcgtataaatcatattctattttc 17533373  T
Q  528 attcatat 535  Q
    ||||||||    
T  17533374 attcatat 17533381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 22000636 - 22000498
Alignment:
Q  72 cagagatgaatgggttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagt 171  Q
    ||||||||||||| |||||||||||| ||| | |||||||| ||| || ||| | | |  ||| | |||| |||| ||||||||||||||||||    ||    
T  22000636 cagagatgaatggattggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgt 22000537  T
Q  172 tgggattggttcctcatgtgcaactttagttttcttttca 211  Q
    | ||||||||||||||||||||||||  | ||||||||||    
T  22000536 t-ggattggttcctcatgtgcaacttcggatttcttttca 22000498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 497
Target Start/End: Complemental strand, 1929217 - 1929155
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 497  Q
    |||||||||||||||||||||||   ||||||| ||||||||||||||  ||||||||||||||    
T  1929217 aatactatataattataaaagtcgcaatttaca-aaaaataatacatgtaatcaaaatataaaa 1929155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 617
Target Start/End: Original strand, 12311897 - 12312007
Alignment:
Q  507 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 606  Q
    ||||||||||||| ||||| ||||||||||||    |||||| | | ||||||  |||||||||||| ||||  |||||||| | |||||| |||||||     
T  12311897 tataaatcatattttatttccattcatatgttgggatatcaatagaagcatcatcaaaagaactcaacacaagttttgtttaatgttgattaattgaata 12311996  T
Q  607 tcctatctctc 617  Q
    |||| ||||||    
T  12311997 tcctctctctc 12312007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 617
Target Start/End: Original strand, 12283608 - 12283702
Alignment:
Q  523 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 617  Q
    ||||||||||||||||    |||||| | | |||||| |||||||| |||| ||||| |||| ||| | |||||| |||||||||||| ||||||    
T  12283608 ttttcattcatatgttgggatatcaatagaagcatcattaaaagaattcaacacaaattttgattaatgttgattaattgaatctcctctctctc 12283702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 538
Target Start/End: Original strand, 211943 - 211983
Alignment:
Q  498 aagtttttatataaatcatattctattttcattcatatgtt 538  Q
    |||||||  ||||||||||||| ||||||||||||||||||    
T  211943 aagttttcgtataaatcatattttattttcattcatatgtt 211983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 6e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 434 - 616
Target Start/End: Complemental strand, 31183775 - 31183590
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 529  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||  ||||||||| ||||    ||||||| |||||||||||||||||||||| |    
T  31183775 aatactatataatcataaaagtcaccatttaca-aaaaataatacatgtaatcaaaataaaaaatgtaaagttttcatataaatcatattctattttctt 31183677  T
Q  530 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctct 616  Q
    ||||||||||   |||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  31183676 tcatatgttaggatatcaacaaatgtatcaatagaagaactcaaaacaaagtttgtttaatattgattgattgaatttcctctctct 31183590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 437 - 609
Target Start/End: Complemental strand, 29488569 - 29488392
Alignment:
Q  437 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattca 532  Q
    |||||| ||| ||||||||||  ||||| | ||||||||| |||| |||||||||| ||||    |||||||  ||||||||||||| ||||||||||||    
T  29488569 actataaaatgataaaagtcacgatttaga-aaaaataatgcatgtgatcaaaataaaaaatataaagttttcgtataaatcatattttattttcattca 29488471  T
Q  533 tatgttatagtatcaacaaatgcatcaat--aaaagaactcaatacaaagtttgtttactattgattgattgaatctcc 609  Q
    |||||||   |||||||||||||||||||  |||||||||||| |||||||||||||| | ||||||||||||||||||    
T  29488470 tatgttaagatatcaacaaatgcatcaattaaaaagaactcaaaacaaagtttgtttaatgttgattgattgaatctcc 29488392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 2137083 - 2136942
Alignment:
Q  468 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 563  Q
    |||||||||||||| |||||||| | ||||    |||||||  || ||||||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  2137083 aaaaataatacatgtgatcaaaacaaaaaatctaaagttttcgtagaaatcatattctattttcattcatatgttaggatatcaacaaatgcattaataa 2136984  T
Q  564 aagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
    ||||| |||| ||||||||| |||| | ||||||||||||||    
T  2136983 aagaattcaaaacaaagtttatttaatgttgattgattgaat 2136942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 543 - 619
Target Start/End: Complemental strand, 51273262 - 51273186
Alignment:
Q  543 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctc 619  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||    
T  51273262 tatcaacaactgcatcaataaaagaactcaaaacaaaatttgtttaatattgattgattgaatctcctctctctctc 51273186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 434 - 539
Target Start/End: Original strand, 22790945 - 22791053
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 529  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||||| ||||    |||||||  ||||||||||||| |||||||||    
T  22790945 aatactatataatcataaaagtcacaatttaca-aaaaataatacatgtgatcaaaataaaaaacttaaagttttcgtataaatcatattttattttcat 22791043  T
Q  530 tcatatgtta 539  Q
    ||||||||||    
T  22791044 tcatatgtta 22791053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 539
Target Start/End: Complemental strand, 50709728 - 50709686
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgtta 539  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  50709728 aaagttttcatataaatcatattctattttcattcatatgtta 50709686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 579
Target Start/End: Original strand, 50461121 - 50461157
Alignment:
Q  543 tatcaacaaatgcatcaataaaagaactcaatacaaa 579  Q
    ||||||||||||||||||||||||||||||| |||||    
T  50461121 tatcaacaaatgcatcaataaaagaactcaaaacaaa 50461157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 535
Target Start/End: Complemental strand, 16123084 - 16123013
Alignment:
Q  468 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatat 535  Q
    ||||||||||||| ||||||||||| ||||    |||||||  |||||| |||||| |||||||||||||||    
T  16123084 aaaaataatacattcgatcaaaataaaaaatgtaaagttttcttataaaccatattatattttcattcatat 16123013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 437 - 619
Target Start/End: Complemental strand, 36925856 - 36925673
Alignment:
Q  437 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa---aaagtttttatataaatcatattctattttcattcat 533  Q
    |||||||||  ||||||||||  ||||||| |||||||||||||| |||||||||| |||   ||||||||  || |||||||||||||||||||||||     
T  36925856 actatataaccataaaagtcacaatttaca-aaaaataatacatgtgatcaaaataaaaatgtaaagttttcgtaaaaatcatattctattttcattcac 36925758  T
Q  534 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctc 619  Q
    |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| ||||||||    
T  36925757 atgttaga-tatcaacaaatacatcaataaaagaactcaaaacaaagtttgtttaatgttgattgattgaatctcctctctctctc 36925673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 434 - 609
Target Start/End: Complemental strand, 26352920 - 26352741
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 529  Q
    ||||||||| ||| ||||||||||| ||||||| |||||||||||| |||||||||||| ||||    |||||||  ||||||||||||| |||||||||    
T  26352920 aatactataaaatcataaaagtcataatttaca-aaaaataatacaagcgatcaaaataaaaaatgtaaagttttcgtataaatcatattttattttcat 26352822  T
Q  530 tcata-tgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcc 609  Q
    ||||| |||||   |||||||||||  |||  ||||||||||||| || | |||| |||| | ||||||||||||||||||    
T  26352821 tcataatgttaggatatcaacaaatttatcggtaaaagaactcaaaactacgtttatttaatgttgattgattgaatctcc 26352741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 498 - 615
Target Start/End: Complemental strand, 44986650 - 44986533
Alignment:
Q  498 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 597  Q
    |||||||  ||||||||||||| |||||||| | |||| |||   ||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||    
T  44986650 aagttttagtataaatcatattatattttcacttatatattaagatatcaacaaatgcatcaataaaagaacccaaaacaaagtttgtttaatgttgatt 44986551  T
Q  598 gattgaatctcctatctc 615  Q
    ||||||||||||| ||||    
T  44986550 gattgaatctcctttctc 44986533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 508 - 617
Target Start/End: Complemental strand, 45388997 - 45388888
Alignment:
Q  508 ataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatct 607  Q
    |||||||||||| |||||||||||||||||||   ||| |||||||||||||||||||||||| || ||||||| |||||| | ||||||||||||||||    
T  45388997 ataaatcatattatattttcattcatatgttaggatattaacaaatgcatcaataaaagaacttaaaacaaagtatgtttaatgttgattgattgaatct 45388898  T
Q  608 cctatctctc 617  Q
    | | ||||||    
T  45388897 catctctctc 45388888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 434 - 608
Target Start/End: Complemental strand, 3353439 - 3353265
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa---aagtttttatataaatcatattctattttcatt 530  Q
    ||||||||||||| |||||||||   ||||||| |||||||| |||||  ||||||||| ||     |||||||  |||||||||||| | |||||||||    
T  3353439 aatactatataatcataaaagtcccaatttaca-aaaaataacacatg--atcaaaataaaattgtgaagttttcgtataaatcatatccaattttcatt 3353343  T
Q  531 catatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctc 608  Q
    |||||||||   |||||||||||| || ||||||||||||||| |||||||||||||| | ||||||||| |||||||    
T  3353342 catatgttaggatatcaacaaatgtatgaataaaagaactcaaaacaaagtttgtttaatgttgattgatcgaatctc 3353265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 520 - 605
Target Start/End: Original strand, 36525847 - 36525932
Alignment:
Q  520 ctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
    |||||||||||||||| |||     ||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||    
T  36525847 ctattttcattcatatattaggacgtcaacaaatgcatcaataaaaaaactcaaaacaaaatttgtttaatattgattgattgaat 36525932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 617
Target Start/End: Complemental strand, 18858680 - 18858610
Alignment:
Q  547 aacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 617  Q
    |||||||||||||||||||||| | || |||||||||||||| |  |||||||||||||||| | ||||||    
T  18858680 aacaaatgcatcaataaaagaatttaaaacaaagtttgtttaatgctgattgattgaatctcttctctctc 18858610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 497
Target Start/End: Complemental strand, 14749606 - 14749544
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 497  Q
    ||||||||||||| ||||||||| | ||||||| |||||||||||||| |||||||||| ||||    
T  14749606 aatactatataatcataaaagtcgtgatttaca-aaaaataatacatgtgatcaaaataaaaaa 14749544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 607
Target Start/End: Complemental strand, 11458070 - 11457964
Alignment:
Q  501 tttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgat 600  Q
    |||| |||||||| ||||| ||||||||||||||| ||||  |||||||| | |||||| ||||| ||| ||| ||||| ||||| || | |||||| ||    
T  11458070 ttttcatataaataatattatattttcattcatatattatgatatcaacataagcatcattaaaataacgcaacacaaattttgtctaatgttgattaat 11457971  T
Q  601 tgaatct 607  Q
    | |||||    
T  11457970 taaatct 11457964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 492
Target Start/End: Complemental strand, 45389076 - 45389019
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaata 492  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||||||    
T  45389076 aatactatataatcataaaagtcacaatttaca-aaaaataatacatgtgatcaaaata 45389019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 498
Target Start/End: Original strand, 43344689 - 43344752
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaa 498  Q
    ||||||||||||| ||||||||||  ||| ||| |||||||||||||| |||||||||| |||||    
T  43344689 aatactatataatcataaaagtcacaattcaca-aaaaataatacatgtgatcaaaataaaaaaa 43344752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 434 - 606
Target Start/End: Complemental strand, 47014676 - 47014501
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 529  Q
    ||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||| ||||    ||| |||   ||||||||||||| ||||||||    
T  47014676 aatactatataatcataaaagttataatttaca-aaaaataatacatgcgatcaaaataaaaaatgtaaagatttcgcataaatcatattcgattttcat 47014578  T
Q  530 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 606  Q
    ||||||||||   |||||||||||||||||||||||||||| || |||||||| ||||| | ||||||| |||||||    
T  47014577 tcatatgttaggatatcaacaaatgcatcaataaaagaactaaaaacaaagttcgtttaatgttgattggttgaatc 47014501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 434 - 606
Target Start/End: Complemental strand, 21854013 - 21853839
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 529  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||||  |||||||||| |||     ||||  |  |||||||||||||||||||||||    
T  21854013 aatactatataatcataaaagtcacgatttacagaaaa-taatacatatgatcaaaataaaaattgtgaagtgatc-tataaatcatattctattttcat 21853916  T
Q  530 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 606  Q
    ||||||||||   ||||||||||||||||||||||||||||| | ||||| ||| |||| | |||||||||||||||    
T  21853915 tcatatgttaggatatcaacaaatgcatcaataaaagaactctaaacaaattttatttaatgttgattgattgaatc 21853839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 497 - 620
Target Start/End: Original strand, 31489382 - 31489505
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 596  Q
    ||||||||  ||||||||||||| |||||||||||||||||||   ||||| ||||||||||||||||||||||||| ||||| |||||||| | |||||    
T  31489382 aaagttttcgtataaatcatattttattttcattcatatgttaagatatcagcaaatgcatcaataaaagaactcaaaacaaaatttgtttaatgttgat 31489481  T
Q  597 tgattgaatctcctatctctctct 620  Q
    ||||| |||||  |||||||||||    
T  31489482 tgattaaatctattatctctctct 31489505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 497 - 615
Target Start/End: Complemental strand, 50387442 - 50387325
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 596  Q
    ||||||||  |||||||||||||||||||||||| |||||||| | ||| ||||||| |||||||||| |||||| | | |||||||||||| | |||||    
T  50387442 aaagttttcgtataaatcatattctattttcatttatatgttagaatattaacaaatacatcaataaaggaactc-agataaagtttgtttaatgttgat 50387344  T
Q  597 tgattgaatctcctatctc 615  Q
    |||||||||||||| ||||    
T  50387343 tgattgaatctcctctctc 50387325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 518 - 615
Target Start/End: Original strand, 24611339 - 24611436
Alignment:
Q  518 ttctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctc 615  Q
    ||||||||| |||||||| ||| |  |||||||||||| ||||||||||||||||| |  ||||||||||| | ||||||||||||||||||| ||||    
T  24611339 ttctatttttattcatatattagaaaatcaacaaatgcttcaataaaagaactcaaaatcaagtttgtttaatgttgattgattgaatctcctctctc 24611436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 434 - 618
Target Start/End: Complemental strand, 21842863 - 21842678
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 529  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||||||| ||     ||||| |   || |||| ||||| |||||||||    
T  21842863 aatactatataatcataaaagtcacgatttac-gaaaaataatacatg--atcaaaataaaagttgtaaagtctacgtaaaaattatattttattttcat 21842767  T
Q  530 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctct 618  Q
    ||||| |||    ||||||||||| ||||||||||| ||||  | ||||||||| |||| | |||||||||||||| |||| |||||||    
T  21842766 tcataagtttggatatcaacaaatacatcaataaaaaaactataaacaaagtttatttaatgttgattgattgaatatcctttctctct 21842678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 37983459 - 37983597
Alignment:
Q  72 cagagatgaatgggttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagt 171  Q
    ||||||||||||| |||||||||||| ||| |||||||||| ||| || ||| | | |  ||| | |||| |||| ||||||||||||||||||    ||    
T  37983459 cagagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgt 37983558  T
Q  172 tgggattggttcctcatgtgcaactttagttttcttttca 211  Q
    | ||||||||||||||||||||||||  | ||||||||||    
T  37983559 t-ggattggttcctcatgtgcaacttcggatttcttttca 37983597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 497 - 607
Target Start/End: Original strand, 53530563 - 53530673
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 596  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||  ||| | || | | || | ||||||||||||| ||||| |||||||| |||||||    
T  53530563 aaagttttcgtataaatcatattcgattttcattcatatcttatgatattagcagaagtattattaaaagaactcaacacaaattttgtttaatattgat 53530662  T
Q  597 tgattgaatct 607  Q
    | |||||||||    
T  53530663 taattgaatct 53530673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 17688218 - 17688342
Alignment:
Q  72 cagagatgaatgggttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagt 171  Q
    ||||||||||||| |||||||||||| ||| |||||||||| ||| || ||| | | |  ||| | |||| |||| ||||||||||||||||||    ||    
T  17688218 cagagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgt 17688317  T
Q  172 tgggattggttcctcatgtgcaactt 197  Q
    | ||||||||||||||||||||||||    
T  17688318 t-ggattggttcctcatgtgcaactt 17688342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 565
Target Start/End: Complemental strand, 24121372 - 24121239
Alignment:
Q  435 atactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcatt 530  Q
    |||||||||||| ||||||||||  ||||||  |||||||||| |||  ||||||||||||||    || ||||   ||||| ||||||||||||| |||    
T  24121372 atactatataatcataaaagtcacaatttacc-aaaaataatatatgttatcaaaatataaaatataaaattttcgaataaaacatattctatttttatt 24121274  T
Q  531 catatgttatagtatcaacaaatgcatcaataaaa 565  Q
    ||||| |||  | ||||||||||||||||||||||    
T  24121273 catatattagggaatcaacaaatgcatcaataaaa 24121239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 617
Target Start/End: Complemental strand, 21858504 - 21858320
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 529  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||||||| ||     ||||| |   || |||| |||||||||||||||    
T  21858504 aatactatataatcataaaagtcacgatttac-gaaaaataatacatg--atcaaaataaaagttgtaaagtctacgtaaaaattatattctattttcat 21858408  T
Q  530 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 617  Q
    ||||| |||    ||||||||| | ||||||||||| |||   | ||||||||| |||| | |||||||||||||| |||| ||||||    
T  21858407 tcataagtttggatatcaacaactacatcaataaaaaaacaataaacaaagtttatttaatgttgattgattgaatatcctctctctc 21858320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 539
Target Start/End: Complemental strand, 43471974 - 43471932
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgtta 539  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  43471974 aaagttttcatataaatcatattctattttcattcatatgtta 43471932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 8913685 - 8913624
Alignment:
Q  544 atcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
    |||||||||||||||||||||| ||||||| ||||||||| |||  | ||||||||||||||    
T  8913685 atcaacaaatgcatcaataaaaaaactcaaaacaaagtttattttatgttgattgattgaat 8913624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 16343210 - 16343146
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaa 498  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| |||||    
T  16343210 aatactatataatcataaaagtcgcaatttacaaaaaaataatacatgtgatcaaaataaaaaaa 16343146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 539
Target Start/End: Original strand, 1341547 - 1341622
Alignment:
Q  468 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgtta 539  Q
    |||||||||||| | |||||||||| ||||    ||||||| ||||||| |||||| |||||||||||||||||||    
T  1341547 aaaaataatacacgtgatcaaaataaaaaatgtaaagttttcatataaaacatattttattttcattcatatgtta 1341622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 497
Target Start/End: Original strand, 36172019 - 36172081
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 497  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  36172019 aatactatataatcataaaagtcgcaatttaca-aaaaataatacatgtgatcaaaataaaaaa 36172081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 499
Target Start/End: Complemental strand, 35433547 - 35433483
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaa 499  Q
    ||||||||||||| |||||| ||   ||||||| |||||||||||||| |||||||||| ||||||    
T  35433547 aatactatataatcataaaaatcgcgatttaca-aaaaataatacatgtgatcaaaataaaaaaaa 35433483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 438 - 607
Target Start/End: Original strand, 44797994 - 44798167
Alignment:
Q  438 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcattcat 533  Q
    ||||||||| ||||||||||  ||||||| ||||| |||||||| |||||||||| |||    ||||||||  ||||||||||||| |||||||||||||    
T  44797994 ctatataatcataaaagtcacaatttacaaaaaaaaaatacatgtgatcaaaataaaaattgtaaagttttcgtataaatcatattatattttcattcat 44798093  T
Q  534 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatct 607  Q
    ||||||   ||||||||||||  ||||||||||||||||| ||||||||| ||||   ||||||||||||||||    
T  44798094 atgttaggatatcaacaaatgtttcaataaaagaactcaaaacaaagtttatttaacgttgattgattgaatct 44798167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 438 - 605
Target Start/End: Original strand, 31396988 - 31397158
Alignment:
Q  438 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcat 533  Q
    ||||||||| ||||||||||  ||||||| |||| |||||| || |||||||||| ||||    || |||| |||||||||||||| |||||| ||| ||    
T  31396988 ctatataatcataaaagtcacaatttaca-aaaagtaatacttgtgatcaaaataaaaaatataaaattttcatataaatcatattttatttttatttat 31397086  T
Q  534 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
    |||||    ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  31397087 atgttgggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattgattgaat 31397158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 498 - 603
Target Start/End: Complemental strand, 47278002 - 47277897
Alignment:
Q  498 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 597  Q
    |||||||| ||||||| || ||||||||||| |||||| |||   ||||||||||||| |||||||||||| |||| |||||||||| ||| | ||||||    
T  47278002 aagtttttgtataaataattttctattttcactcatatattaggatatcaacaaatgcttcaataaaagaattcaaaacaaagtttgattaatgttgatt 47277903  T
Q  598 gattga 603  Q
    ||||||    
T  47277902 gattga 47277897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 434 - 539
Target Start/End: Complemental strand, 48138767 - 48138659
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 529  Q
    ||||||||||||| |||||| |||  ||||||| |||||||||| ||| |||||||||| ||||    |||||||  ||||||||||||| ||||||| |    
T  48138767 aatactatataatcataaaattcacaatttaca-aaaaataatatatgtgatcaaaataaaaaatgtaaagttttcgtataaatcatattatattttcgt 48138669  T
Q  530 tcatatgtta 539  Q
    ||||||||||    
T  48138668 tcatatgtta 48138659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 605
Target Start/End: Complemental strand, 22201353 - 22201255
Alignment:
Q  507 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
    ||||||||||||| ||||||||||||||  ||| | ||||| || | | |||| ||||| | ||||| ||||| ||||| ||||||||||| |||||||    
T  22201353 tataaatcatattatattttcattcatacattagaatatcagcagaagtatcattaaaatagctcaacacaaattttgtctactattgattaattgaat 22201255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 605
Target Start/End: Original strand, 22236468 - 22236566
Alignment:
Q  507 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
    ||||||||||||| ||||||||||||||  ||| | ||||| || | | |||| ||||| | ||||| ||||| ||||| ||||||||||| |||||||    
T  22236468 tataaatcatattatattttcattcatacattagaatatcagcagaagtatcattaaaatagctcaacacaaattttgtctactattgattaattgaat 22236566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 9229429 - 9229488
Alignment:
Q  437 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 497  Q
    |||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  9229429 actatataatcataaaagtcgcgatttaca-aaaaataatacatgtgatcaaaataaaaaa 9229488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 427 - 605
Target Start/End: Complemental strand, 14180402 - 14180223
Alignment:
Q  427 accctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattcta 522  Q
    |||||| |||||||| |||| ||||||||||  ||||||| ||||||||| |||| |||||||||| || |    || ||||  ||||||||||||||||    
T  14180402 acccttcaatactatttaatcataaaagtcacaatttaca-aaaaataatgcatgtgatcaaaataaaatatgtaaatttttcgtataaatcatattcta 14180304  T
Q  523 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
    |||||||||||| ||||   ||||||||||||||||||||||||||||||  |||||||||||||| | ||||||||||||||    
T  14180303 ttttcattcataagttaggatatcaacaaatgcatcaataaaagaactca--acaaagtttgtttaatgttgattgattgaat 14180223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 434 - 617
Target Start/End: Complemental strand, 37232104 - 37231918
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 529  Q
    ||||||||||||  ||||||||||  ||||||| |||||||||| ||| ||||||| || ||||    || ||||  |||||||||||||||||||||||    
T  37232104 aatactatataagcataaaagtcacaatttaca-aaaaataatatatgtgatcaaagtaaaaaatgtaaatttttcgtataaatcatattctattttcat 37232006  T
Q  530 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 617  Q
    | ||||||||   ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||| ||| |||| ||||||    
T  37232005 ttatatgttaggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattaatttaatttcctttctctc 37231918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 497 - 609
Target Start/End: Original strand, 2813633 - 2813745
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 596  Q
    ||||||||| |||||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||| |||||||||||||| | |||||    
T  2813633 aaagtttttgtataaatcatattctattttcattcatatgttaggatatcaacaaatatatcaataaaagaactcaaaacaaagtttgtttaatgttgat 2813732  T
Q  597 tgattgaatctcc 609  Q
    ||||| |||||||    
T  2813733 tgattaaatctcc 2813745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 468 - 617
Target Start/End: Original strand, 9136558 - 9136711
Alignment:
Q  468 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 563  Q
    ||||| |||||||| |||||||||| ||||    || ||||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  9136558 aaaaaaaatacatgtgatcaaaataaaaaatgtaaaattttcgtataaatcatattctattttcattcatatgttatgatatcaacaaatgcatcaataa 9136657  T
Q  564 aagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 617  Q
     |||| |||| | ||| ||| |||| | || ||| |||||||||| | ||||||    
T  9136658 gagaattcaaaataaaatttatttattgttaatttattgaatctcatctctctc 9136711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 497 - 608
Target Start/End: Original strand, 31431248 - 31431359
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 596  Q
    |||||||| |||||||||||||| |||||||||||||||||||   |||| ||| |  ||||| ||||||||||||| ||||| ||||| || | |||||    
T  31431248 aaagttttcatataaatcatattatattttcattcatatgttaagatatccacagaaacatcattaaaagaactcaacacaaattttgtctaatcttgat 31431347  T
Q  597 tgattgaatctc 608  Q
    |  |||||||||    
T  31431348 tatttgaatctc 31431359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 608
Target Start/End: Complemental strand, 11558894 - 11558829
Alignment:
Q  543 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctc 608  Q
    |||||||||||||| ||||||||||| |||| ||||| |||||||| | |||||| ||||||||||    
T  11558894 tatcaacaaatgcaacaataaaagaaatcaaaacaaaatttgtttaatgttgattaattgaatctc 11558829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 565
Target Start/End: Original strand, 39297500 - 39297637
Alignment:
Q  434 aatactatataattataaaagtcatcatttacag--aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttc 527  Q
    ||||||||||||| ||||||||||  |||||||   |||||||||||||  |||||||||| ||||    |||||||| || | || ||||| |||||||    
T  39297500 aatactatataatcataaaagtcacaatttacaacaaaaaataatacatatgatcaaaataaaaaatttaaagtttttgtaaacattatattttattttc 39297599  T
Q  528 attcatatgttatagtatcaacaaatgcatcaataaaa 565  Q
    ||| |||| |||   |||||||||||| ||||||||||    
T  39297600 atttatatattaggatatcaacaaatgtatcaataaaa 39297637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 565
Target Start/End: Complemental strand, 22470822 - 22470724
Alignment:
Q  470 aaataatacatgcgatcaaaatataaa---aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaa 565  Q
    |||||||||||| |||||||||| |||   ||||||||  ||||||||||||||||| ||||||  |||||||   ||||||||||  ||||| |||||    
T  22470822 aaataatacatgtgatcaaaataaaaatataaagttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa 22470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 538
Target Start/End: Complemental strand, 32579186 - 32579149
Alignment:
Q  501 tttttatataaatcatattctattttcattcatatgtt 538  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  32579186 tttttttataaatcatattctattttctttcatatgtt 32579149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 585
Target Start/End: Complemental strand, 12006992 - 12006871
Alignment:
Q  468 aaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 563  Q
    |||||||||||||| |||||||||| |||    ||||||||  ||||||  ||||| |||||| |||||||||||    |||||| ||| |||| | |||    
T  12006992 aaaaataatacatgtgatcaaaataaaaaatgtaaagttttcttataaactatattatatttttattcatatgttgggatatcaagaaaagcataattaa 12006893  T
Q  564 aagaactcaatacaaagtttgt 585  Q
    |||||||| | ||||| |||||    
T  12006892 aagaactctacacaaattttgt 12006871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 507 - 617
Target Start/End: Complemental strand, 44746663 - 44746553
Alignment:
Q  507 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 606  Q
    ||||||||||||| ||||||||||||||| |||   ||||||||||||||||||||||| ||||||| |||||||||||||| | ||| |||||||||||    
T  44746663 tataaatcatattttattttcattcatatcttaggatatcaacaaatgcatcaataaaaaaactcaaaacaaagtttgtttaatgttggttgattgaatc 44746564  T
Q  607 tcctatctctc 617  Q
    |||| ||||||    
T  44746563 tcctctctctc 44746553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 430 - 605
Target Start/End: Complemental strand, 21619888 - 21619711
Alignment:
Q  430 ctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa---aagtttttatataaatcatattctatttt 526  Q
    ||||| ||||||| ||| ||||||||||  ||  ||| |||||||||||||| |||||||||||||||   ||  ||||   |||| || ||||||||||    
T  21619888 ctttattactatacaatcataaaagtcacaatcgacaaaaaaataatacatgtgatcaaaatataaaatataaaattttcg-taaaacacattctatttt 21619790  T
Q  527 cattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaat 605  Q
     ||||||||||||   ||| ||||  ||||||||||||| |||||||   |||||||||||| | ||||||||||||||    
T  21619789 tattcatatgttaggatattaacacgtgcatcaataaaataactcaaataaaagtttgtttaatgttgattgattgaat 21619711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 499 - 617
Target Start/End: Original strand, 35823460 - 35823578
Alignment:
Q  499 agtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 598  Q
    ||||||| ||||||||||||| |||||||||||||||||||   |||||| | | |  ||| ||||||||||||| ||||| ||||| || | ||||||     
T  35823460 agtttttttataaatcatattttattttcattcatatgttaggatatcaatagaagtgtcattaaaagaactcaacacaaattttgtataatgttgatta 35823559  T
Q  599 attgaatctcctatctctc 617  Q
    |||||||||| | ||||||    
T  35823560 attgaatctcttctctctc 35823578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 497 - 607
Target Start/End: Original strand, 43770428 - 43770537
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 596  Q
    ||||||||  |||||||||||||||||| |  |||||| ||||   ||||||||||| ||| ||||||| ||||||| || ||||||||||| | |||||    
T  43770428 aaagttttcgtataaatcatattctattatatttcatacgttaggatatcaacaaattcattaataaaataactcaaaac-aagtttgtttaatgttgat 43770526  T
Q  597 tgattgaatct 607  Q
    |||||||||||    
T  43770527 tgattgaatct 43770537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 434 - 539
Target Start/End: Complemental strand, 10632355 - 10632247
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 529  Q
    |||| |||||||| ||||| ||||  ||||||| |||||||||||||| |||||||||  |||    ||||||||  ||||||||||||| |||||||||    
T  10632355 aatattatataatcataaatgtcacaatttaca-aaaaataatacatgtgatcaaaattaaaaatgtaaagttttcgtataaatcatattttattttcat 10632257  T
Q  530 tcatatgtta 539  Q
    ||||||||||    
T  10632256 tcatatgtta 10632247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 585
Target Start/End: Complemental strand, 4776034 - 4775964
Alignment:
Q  515 atattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgt 585  Q
    ||||| ||||||||| ||||||||||| |||||||| | |||||| | ||||||||||| ||||| |||||    
T  4776034 atattatattttcatccatatgttataatatcaacataagcatcattgaaagaactcaacacaaattttgt 4775964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 610
Target Start/End: Original strand, 22198747 - 22198846
Alignment:
Q  507 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 606  Q
    ||||||||||||  |||||||||| ||||||||   ||||||||||||  | ||    ||||||||| |||||||||||||| | |||||||| ||||||    
T  22198747 tataaatcatatcgtattttcatttatatgttaggatatcaacaaatgtgttaa----agaactcaaaacaaagtttgtttaatgttgattgactgaatc 22198842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 497
Target Start/End: Original strand, 47724673 - 47724735
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 497  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  47724673 aatactatataatcataaaagtcgcaatttaca-aaaaataatacatgtgatcaaaataaaaaa 47724735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 25204405 - 25204454
Alignment:
Q  559 aataaaagaactcaatacaaagtttgtttactattgattgattgaatctc 608  Q
    |||||||||| |||| ||||| |||||||| | |||||||||||||||||    
T  25204405 aataaaagaattcaaaacaaattttgtttaatgttgattgattgaatctc 25204454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 588
Target Start/End: Complemental strand, 34733988 - 34733923
Alignment:
Q  523 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgttta 588  Q
    |||||||||||||||||   |||||| ||||||||||||||||  ||| || ||||| ||||||||    
T  34733988 ttttcattcatatgttaggatatcaataaatgcatcaataaaaacacttaaaacaaattttgttta 34733923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 38947679 - 38947745
Alignment:
Q  476 tacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgtt 538  Q
    |||||| |||||||||||||||    || ||||  ||||||| ||||||||||||||||||||||||    
T  38947679 tacatgtgatcaaaatataaaatataaaattttcgtataaattatattctattttcattcatatgtt 38947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 610
Target Start/End: Complemental strand, 394425 - 394312
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 596  Q
    ||||||||  |||||||| |||| |||||| |||| |||||||| ||||||||||||| ||||||| |||||||||| ||||| |||||||| | |||||    
T  394425 aaagttttcgtataaatcgtattatattttaattcttatgttatggtatcaacaaatggatcaatacaagaactcaaaacaaaatttgtttaatgttgat 394326  T
Q  597 tgattgaatctcct 610  Q
    ||||||||||||||    
T  394325 tgattgaatctcct 394312  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 434 - 616
Target Start/End: Complemental strand, 7732545 - 7732361
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaagt-----ttttatataaatcatattctattttca 528  Q
    ||||||||||||| ||||||||||  ||||| | ||||||||||  || | |||||||| ||||| ||     |||| ||||||||||  | ||||||||    
T  7732545 aatactatataatcataaaagtcacaatttata-aaaaataatatgtgtggtcaaaataaaaaaatgtaaattttttgtataaatcat--tatattttca 7732449  T
Q  529 ttcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctct 616  Q
    ||||||||||| | |||||| ||||||||||||||||||||| || || ||||||||||  | |||||||||| |||||||| |||||    
T  7732448 ttcatatgttagaatatcaataaatgcatcaataaaagaacttaaaacgaagtttgtttcatgttgattgattaaatctcctctctct 7732361  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 528 - 617
Target Start/End: Complemental strand, 41634610 - 41634521
Alignment:
Q  528 attcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 617  Q
    |||||||||||| | |||||||||||||||||||||||||||| || | |||||||||||| | |||||||||||||| |||| ||||||    
T  41634610 attcatatgttagaatatcaacaaatgcatcaataaaagaactaaaaataaagtttgtttaatgttgattgattgaatgtcctctctctc 41634521  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 498 - 605
Target Start/End: Original strand, 12848318 - 12848425
Alignment:
Q  498 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 597  Q
    |||||||  ||||||| |||||||||||| |||||||| |||    |||||||||| |||||||||| |||||||| |||||||||||||| | || |||    
T  12848318 aagttttcgtataaattatattctatttttattcatatattaggacatcaacaaatacatcaataaaggaactcaaaacaaagtttgtttaatgttaatt 12848417  T
Q  598 gattgaat 605  Q
    ||||||||    
T  12848418 gattgaat 12848425  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 39329670 - 39329596
Alignment:
Q  510 aaatcatattctattttcattcatatgttatag-tatcaacaaatgcatcaataaaagaactcaatacaaagtttg 584  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||||| ||||||||| |||| ||||||||||    
T  39329670 aaattatattctattttcattcatatatt-tagatatcaacaaatgcatcgataaaagaattcaaaacaaagtttg 39329596  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 597
Target Start/End: Original strand, 8802687 - 8802777
Alignment:
Q  507 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 597  Q
    ||||||||||||| |||||| ||||||||||||   |||||| | | ||||||  |||||||||||| ||||| |||||||| ||||||||    
T  8802687 tataaatcatattatatttttattcatatgttaggatatcaatagaagcatcatcaaaagaactcaacacaaattttgtttaatattgatt 8802777  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 438 - 538
Target Start/End: Complemental strand, 41634766 - 41634663
Alignment:
Q  438 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcat 533  Q
    ||||||||| ||||||||||| ||||| | || || |||||||| |||||||| | ||||    | |||||  |||||||||||||||||||||||||||    
T  41634766 ctatataatcataaaagtcataatttaaaaaagaa-aatacatgtgatcaaaacaaaaaatgtaatgttttcgtataaatcatattctattttcattcat 41634668  T
Q  534 atgtt 538  Q
    |||||    
T  41634667 atgtt 41634663  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 573
Target Start/End: Complemental strand, 36906852 - 36906776
Alignment:
Q  497 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaa 573  Q
    |||||||| ||||||| |||||| ||||||||||||| |||||   ||||||||||  ||| | |||||||||||||    
T  36906852 aaagttttcatataaagcatattatattttcattcatttgttaggatatcaacaaaaacattattaaaagaactcaa 36906776  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 539
Target Start/End: Original strand, 39700891 - 39700923
Alignment:
Q  507 tataaatcatattctattttcattcatatgtta 539  Q
    |||||||||||||||||||||||||||||||||    
T  39700891 tataaatcatattctattttcattcatatgtta 39700923  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 615
Target Start/End: Complemental strand, 5836750 - 5836648
Alignment:
Q  513 tcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctat 612  Q
    ||||||| || ||||||||| ||||||   |||||||| | |||||| ||||||||||||| ||||| ||| | || |  ||||| |||||||||||| |    
T  5836750 tcatattgtactttcattcagatgttaggatatcaacataagcatcattaaaagaactcaacacaaattttatctaatggtgattaattgaatctcctct 5836651  T
Q  613 ctc 615  Q
    |||    
T  5836650 ctc 5836648  T

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Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 499
Target Start/End: Complemental strand, 53854 - 53789
Alignment:
Q  434 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaa 499  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||||    
T  53854 aatactatataatcataaaagtcgcaatttacaaaaaaataatacatgtgatcaaaataaaaaaaa 53789  T

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