View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_16 (Length: 627)
Name: NF11788_low_16
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 28312952 - 28312346
Alignment:
| Q |
11 |
caaaggcgtattggaagaatataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28312952 |
caaaggcgtattggaagaatataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagattcaa |
28312853 |
T |
|
| Q |
111 |
tggcatcaccttggtaggtgatgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28312852 |
cggcatcaccttggtaggtgatgatgtcgtttctatatggaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtgg |
28312753 |
T |
|
| Q |
211 |
aataaggattaagaaaacaggttttgtattgtacagaggcattgctctctataaatctgttagatatggtgaaagctgaagtttcaataatatatatag- |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28312752 |
aataaggattaagaaaacaggttttgtattgtacagaggcattgctctctataaatctgttagatatggtgaaagctgaagtttcaataatatatatagt |
28312653 |
T |
|
| Q |
310 |
---nnnnnnnnnnnnggaaaatatatatgtatagagctgttctgtgtgttgtatgtagagnnnnnnngtcagcggagaaaataaaattctttaaatctca |
406 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28312652 |
ttttttttttattttggaaaatatatatgtatagagctgttttgtgtgtggtatgtagaggttttttgtcagcggagaaaataaaattctttaaatctca |
28312553 |
T |
|
| Q |
407 |
tcttacattaatgttgactttcgacagtactaggaaaatggtgattataactatgtgattttggacattgtataagacaggtttccctaaatgcaattta |
506 |
Q |
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| T |
28312552 |
tcttacattaatgttgactttcgatagtactaggaaaatggtgattataactatgtgattttggacattgtataagacaggtttccctaaatgcaattta |
28312453 |
T |
|
| Q |
507 |
cctaggattgaaatgtaacaatcaatcaatgtaaataaaagtttaatttgttggttgcatttgccaactatatacatattttgaaaacatttttgtctag |
606 |
Q |
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| T |
28312452 |
cctaggattgaaatgtaacaatcaatcaatgtaaataaaagtttaatttgttggttgcatttgccaactatatacatattttgaaaacatttttgtctag |
28312353 |
T |
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| Q |
607 |
ttgattt |
613 |
Q |
| |
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||||||| |
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| T |
28312352 |
ttgattt |
28312346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 28316088 - 28315825
Alignment:
| Q |
12 |
aaaggcgtattggaagaatataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaat |
111 |
Q |
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||||| ||||||||| | ||||||||||||||| ||||| | ||| ||||| | ||||||||| ||||||||||||||||| ||||| |||||||| |
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| T |
28316088 |
aaaggtgtattggaatagcataagaggctctgccaacactaaatggcttgtttatgccgttttctactttagtaagttgaatggtaccatttgatgcaat |
28315989 |
T |
|
| Q |
112 |
ggcatcaccttggtaggtgatgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtgga |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||| ||| | ||||| || ||| |||| |||| |||| ||||||||||||||| |
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| T |
28315988 |
ggcatcaccttggtaggtgatgatttcgtttctatatggaccaaaaaaattcgagaattcaaaagataaattccaattatgatggagcatgaggagtgga |
28315889 |
T |
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| Q |
212 |
ataaggattaagaaaacaggttttgtattgtacagaggcattgctctctataaatctgttagat |
275 |
Q |
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| T |
28315888 |
agaaggattaagaaaacgggttttgtattgtatagaggcatggctatctataaatttgttagat |
28315825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 28320395 - 28320134
Alignment:
| Q |
12 |
aaaggcgtattggaagaatataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaat |
111 |
Q |
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||||||||||||||| | ||||||||||||||| ||||||| ||||||||| | |||| | || ||||||||||||||||| ||||| ||| ||| |
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| T |
28320395 |
aaaggcgtattggaatagcataagaggctctgccaacactatatggcatgtttatgccgttatttactttagtaagttgaatggtaccatttgattcaac |
28320296 |
T |
|
| Q |
112 |
ggcatcaccttggtaggtgatgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtgga |
211 |
Q |
| |
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||||||||||| |||| |||||||||||||| |||||| ||| || ||| | || || || ||| ||| |||||||||| ||||||||||||||| |
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| T |
28320295 |
ggcatcaccttcgtagttgatgatgtcgtttatatatggaccgtaaaaattcgagagttcaaaagataaatcccaattgcgatgtagcatgaggagtgga |
28320196 |
T |
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| Q |
212 |
ataaggattaagaaaacaggttttgtattgtacagaggcattgctctctataaatctgttag |
273 |
Q |
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| T |
28320195 |
agaaggattaagaaaacgggttttgtattgtatagaggcatggctttctacaaatttgttag |
28320134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 382 - 520
Target Start/End: Complemental strand, 28315740 - 28315603
Alignment:
| Q |
382 |
agaaaataaaattctttaaatctcatcttaca---ttaatgttgactttcgacagtactaggaaaatggtgattataactatgtgattttggacattgta |
478 |
Q |
| |
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||||||||||||||||||| | |||||||||| |||||||||||||| || || || ||||||||||||||| ||| |||| ||||||||||||| | |
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| T |
28315740 |
agaaaataaaattctttaa-tatcatcttacaatgttaatgttgacttttgatagaacaaggaaaatggtgattgaaacaatgtcattttggacattgca |
28315642 |
T |
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| Q |
479 |
taagacaggtttccctaaatgcaatttacctaggattgaaat |
520 |
Q |
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| T |
28315641 |
t---accagtttcggtaaatgcaatttacataggattgaaat |
28315603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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