View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_19 (Length: 574)
Name: NF11788_low_19
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 52274307 - 52273751
Alignment:
| Q |
1 |
aatcgattttattaagtttgtaggtcattgcagtctgacccaaaaaagtgtaaacagagacccgtatacctagctaaattaacatgtgcaaaattaaatt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52274307 |
aatcaattttattaagtttgtaggtcattgcagtctgacccaaaaaagtgtaaacagagacccgtatacctagctaaattaacatgtgcaaaattaaatt |
52274208 |
T |
|
| Q |
101 |
aaattgnnnnnnnnnn------tggcgttaaaataaaagcaatttcnnnnnnnnnnnnnngtatggcgcgttt--atagaattttcaaacaaatttaccg |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52274207 |
aaattaaattgaaaaaaaaaaatggcgttaaaataaaagcaatttctttttttt------gtatggcgcgtttttatagaattttcaaacaaatttaccg |
52274114 |
T |
|
| Q |
193 |
ccatttatttaggttaggtttggactagaaccatttcacgatccgttttaattcgacaaggttaaagcctttgtttccaaaaccaaaaagtgtcgttcag |
292 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52274113 |
ccatttatttaggttaggtttagactagaaccatttcacgatccgttttaattcgataaggttaaagcctttgtttccaaaaccaaaaagtgtcgttcag |
52274014 |
T |
|
| Q |
293 |
atctcagaatcaaacatggatagcgacgaagatttcgaagccttaccttcttctcccgtcatcgaacgaaagcttaagcgtttgaagaaggcatctaggg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52274013 |
atctcagaatcaaacatggatagcgacgaagatttcgaagccttaccttcttctcccgtcatcgaacgaaagcttaagcgtttgaagaaggcatctaggg |
52273914 |
T |
|
| Q |
393 |
tttcagaaaatcctcttcccttttcgtccccaatcaaattctctggatccgaacagaattctggcttggaggtgtcaattagaggatctgtccctgaagt |
492 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52273913 |
tttcagaaaatcctctccccttttcgtccccaatcaaattctctggatccgaacagaattctggcttggaggtgtcaattagaggatctgtccctgaagt |
52273814 |
T |
|
| Q |
493 |
tgaaagcttgggtggtgaaaatgttactgacacagttgaggaaaacgatttgggtgcgaagag |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52273813 |
tgaaagcttgggtggtgaaaatgttactgacacagttgaggaaaacgatttgggtgcgaagag |
52273751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University